Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 KRT8P7-201ENST00000533003 1432 ntBASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.8■□□□□ 0.6
SHROOM3Q8TF72 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 SPDYE15P-201ENST00000424157 909 ntBASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 LINC01238-205ENST00000567549 1107 ntBASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 STARP1-201ENST00000397973 869 ntBASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.79■□□□□ 0.6
SHROOM3Q8TF72 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 AL354751.1-201ENST00000412768 1863 ntBASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 AC135050.7-201ENST00000624508 2218 ntBASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 AC026396.1-201ENST00000419388 421 ntBASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.78■□□□□ 0.6
SHROOM3Q8TF72 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 HBZP1-201ENST00000354915 429 ntBASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AP000523.1-201ENST00000398242 1049 ntBASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AC024243.1-201ENST00000609234 778 ntBASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AC112497.1-201ENST00000624824 639 ntBASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.77■□□□□ 0.6
SHROOM3Q8TF72 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms