Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MEG3-211ENST00000452514 461 ntTSL 3 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 RNA5SP416-201ENST00000516838 111 ntBASIC19.49■□□□□ 0.71
CHD9Q3L8U1 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 AL356309.3-201ENST00000624132 1934 ntBASIC19.49■□□□□ 0.71
CHD9Q3L8U1 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 ABCD1P5-201ENST00000445663 754 ntBASIC19.49■□□□□ 0.71
CHD9Q3L8U1 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CHD9Q3L8U1 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.48■□□□□ 0.71
CHD9Q3L8U1 MTMR9LP-203ENST00000426597 1545 ntBASIC19.48■□□□□ 0.71
CHD9Q3L8U1 AC004817.3-201ENST00000602957 2129 ntBASIC19.48■□□□□ 0.71
CHD9Q3L8U1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 AL645939.2-201ENST00000427340 991 ntBASIC19.48■□□□□ 0.71
CHD9Q3L8U1 MIR4469-201ENST00000583919 79 ntBASIC19.48■□□□□ 0.71
CHD9Q3L8U1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.48■□□□□ 0.71
CHD9Q3L8U1 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 AC107918.4-202ENST00000641623 219 ntBASIC19.47■□□□□ 0.71
CHD9Q3L8U1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CHD9Q3L8U1 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 HLA-J-203ENST00000494367 1087 ntBASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.46■□□□□ 0.71
CHD9Q3L8U1 AC011467.2-201ENST00000598425 242 ntBASIC19.46■□□□□ 0.71
CHD9Q3L8U1 AC106028.4-201ENST00000614509 607 ntBASIC19.46■□□□□ 0.71
CHD9Q3L8U1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.45■□□□□ 0.7
CHD9Q3L8U1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms