Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
RFX4Q33E94 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX4Q33E94 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.18■□□□□ 0.34
RFX4Q33E94 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX4Q33E94 HLA-A-209ENST00000638375 975 ntBASIC17.18■□□□□ 0.34
RFX4Q33E94 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.18■□□□□ 0.34
RFX4Q33E94 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX4Q33E94 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX4Q33E94 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX4Q33E94 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX4Q33E94 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX4Q33E94 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.17■□□□□ 0.34
RFX4Q33E94 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.17■□□□□ 0.34
RFX4Q33E94 UNC93B5-201ENST00000530315 699 ntBASIC17.17■□□□□ 0.34
RFX4Q33E94 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.17■□□□□ 0.34
RFX4Q33E94 AC012313.1-201ENST00000593393 3059 ntBASIC17.17■□□□□ 0.34
RFX4Q33E94 AC104771.1-201ENST00000603335 964 ntBASIC17.17■□□□□ 0.34
RFX4Q33E94 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX4Q33E94 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.17■□□□□ 0.34
RFX4Q33E94 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
RFX4Q33E94 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
RFX4Q33E94 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
RFX4Q33E94 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX4Q33E94 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
RFX4Q33E94 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RFX4Q33E94 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.16■□□□□ 0.34
RFX4Q33E94 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RFX4Q33E94 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
RFX4Q33E94 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
RFX4Q33E94 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
RFX4Q33E94 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
RFX4Q33E94 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.16■□□□□ 0.34
RFX4Q33E94 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.16■□□□□ 0.34
RFX4Q33E94 AC090192.1-201ENST00000517740 490 ntBASIC17.16■□□□□ 0.34
RFX4Q33E94 C1QL1P1-201ENST00000568105 661 ntBASIC17.16■□□□□ 0.34
RFX4Q33E94 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.16■□□□□ 0.34
RFX4Q33E94 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.16■□□□□ 0.34
RFX4Q33E94 AC004264.1-201ENST00000608354 794 ntBASIC17.16■□□□□ 0.34
RFX4Q33E94 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.16■□□□□ 0.34
RFX4Q33E94 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
RFX4Q33E94 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RFX4Q33E94 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.15■□□□□ 0.34
RFX4Q33E94 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
RFX4Q33E94 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.15■□□□□ 0.34
RFX4Q33E94 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.15■□□□□ 0.34
RFX4Q33E94 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.15■□□□□ 0.34
RFX4Q33E94 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RFX4Q33E94 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 AL645608.8-201ENST00000606034 2086 ntBASIC17.15■□□□□ 0.34
RFX4Q33E94 REXO1L9P-201ENST00000604264 2108 ntBASIC17.15■□□□□ 0.34
RFX4Q33E94 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
RFX4Q33E94 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RFX4Q33E94 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RFX4Q33E94 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms