Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AL121829.2-201ENST00000620908 328 ntBASIC15.12■□□□□ 0.01
NKX2-1P43699 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
NKX2-1P43699 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
NKX2-1P43699 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.12■□□□□ 0.01
NKX2-1P43699 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
NKX2-1P43699 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
NKX2-1P43699 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC15.11■□□□□ 0.01
NKX2-1P43699 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX2-1P43699 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.11■□□□□ 0.01
NKX2-1P43699 AC073111.5-205ENST00000641717 521 ntBASIC15.11■□□□□ 0.01
NKX2-1P43699 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
NKX2-1P43699 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
NKX2-1P43699 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX2-1P43699 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
NKX2-1P43699 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.11■□□□□ 0.01
NKX2-1P43699 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX2-1P43699 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
NKX2-1P43699 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
NKX2-1P43699 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NKX2-1P43699 VPS53-216ENST00000574029 585 ntTSL 4 BASIC15.1■□□□□ 0.01
NKX2-1P43699 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX2-1P43699 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-1P43699 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC15.1■□□□□ 0.01
NKX2-1P43699 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX2-1P43699 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-1P43699 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC15.1■□□□□ 0.01
NKX2-1P43699 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
NKX2-1P43699 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.1■□□□□ 0.01
NKX2-1P43699 AL645608.8-201ENST00000606034 2086 ntBASIC15.1■□□□□ 0.01
NKX2-1P43699 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
NKX2-1P43699 PCDHA12-202ENST00000613593 2588 ntBASIC15.1■□□□□ 0.01
NKX2-1P43699 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
NKX2-1P43699 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
NKX2-1P43699 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-1P43699 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
NKX2-1P43699 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-1P43699 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-1P43699 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-1P43699 KRT8P32-201ENST00000512863 1461 ntBASIC15.09■□□□□ 0.01
NKX2-1P43699 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-1P43699 AC008556.1-201ENST00000610908 2040 ntBASIC15.09■□□□□ 0.01
NKX2-1P43699 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
NKX2-1P43699 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.09■□□□□ 0.01
NKX2-1P43699 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms