Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
COL5A3P25940 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
COL5A3P25940 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 SNAI3-AS1-205ENST00000568633 2096 ntBASIC23.19■■□□□ 1.3
COL5A3P25940 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC23.19■■□□□ 1.3
COL5A3P25940 AC068472.1-201ENST00000474589 881 ntBASIC23.19■■□□□ 1.3
COL5A3P25940 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC23.19■■□□□ 1.3
COL5A3P25940 HOTTIP_1.1-201ENST00000620415 57 ntBASIC23.19■■□□□ 1.3
COL5A3P25940 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.19■■□□□ 1.3
COL5A3P25940 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC23.19■■□□□ 1.3
COL5A3P25940 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
COL5A3P25940 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.19■■□□□ 1.3
COL5A3P25940 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.19■■□□□ 1.3
COL5A3P25940 AC083906.6-201ENST00000641366 219 ntBASIC23.19■■□□□ 1.3
COL5A3P25940 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC23.19■■□□□ 1.3
COL5A3P25940 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
COL5A3P25940 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC23.19■■□□□ 1.3
COL5A3P25940 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
COL5A3P25940 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
COL5A3P25940 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.18■■□□□ 1.3
COL5A3P25940 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC23.18■■□□□ 1.3
COL5A3P25940 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 AC104109.2-201ENST00000602919 1418 ntBASIC23.18■■□□□ 1.3
COL5A3P25940 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC23.18■■□□□ 1.3
COL5A3P25940 AL591424.1-201ENST00000442569 1213 ntBASIC23.18■■□□□ 1.3
COL5A3P25940 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.18■■□□□ 1.3
COL5A3P25940 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC23.18■■□□□ 1.3
COL5A3P25940 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC23.18■■□□□ 1.3
COL5A3P25940 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
COL5A3P25940 AC008687.5-201ENST00000593746 558 ntBASIC23.18■■□□□ 1.3
COL5A3P25940 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC23.18■■□□□ 1.3
COL5A3P25940 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.18■■□□□ 1.3
COL5A3P25940 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
COL5A3P25940 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC23.18■■□□□ 1.3
COL5A3P25940 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.17■■□□□ 1.3
COL5A3P25940 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL5A3P25940 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL5A3P25940 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL5A3P25940 YBX2P1-201ENST00000394192 760 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 AC005104.2-201ENST00000427818 678 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC23.16■■□□□ 1.3
COL5A3P25940 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL5A3P25940 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
COL5A3P25940 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.16■■□□□ 1.3
COL5A3P25940 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 RPSAP43-201ENST00000402237 625 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 UPF3AP3-201ENST00000420996 769 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 MTCL1P1-201ENST00000446207 792 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 AC092910.1-201ENST00000482027 1129 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.16■■□□□ 1.3
COL5A3P25940 RPS29-206ENST00000557111 488 ntTSL 2 BASIC23.16■■□□□ 1.3
COL5A3P25940 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.16■■□□□ 1.3
COL5A3P25940 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.16■■□□□ 1.3
COL5A3P25940 AL356488.2-201ENST00000602755 427 ntBASIC23.16■■□□□ 1.3
COL5A3P25940 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC23.16■■□□□ 1.3
COL5A3P25940 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL5A3P25940 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC23.16■■□□□ 1.3
COL5A3P25940 AL161938.1-201ENST00000569833 2180 ntBASIC23.15■■□□□ 1.3
COL5A3P25940 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC23.15■■□□□ 1.3
COL5A3P25940 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.15■■□□□ 1.3
COL5A3P25940 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL5A3P25940 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms