Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
MSH3P20585 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
MSH3P20585 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.37■□□□□ 0.53
MSH3P20585 WIZP1-201ENST00000531444 2299 ntBASIC18.37■□□□□ 0.53
MSH3P20585 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH3P20585 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 AP000593.1-201ENST00000393668 712 ntBASIC18.36■□□□□ 0.53
MSH3P20585 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
MSH3P20585 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.36■□□□□ 0.53
MSH3P20585 KRT18P41-201ENST00000518924 1277 ntBASIC18.36■□□□□ 0.53
MSH3P20585 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.36■□□□□ 0.53
MSH3P20585 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH3P20585 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.36■□□□□ 0.53
MSH3P20585 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 AC090164.3-201ENST00000610780 2143 ntBASIC18.36■□□□□ 0.53
MSH3P20585 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.36■□□□□ 0.53
MSH3P20585 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
MSH3P20585 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
MSH3P20585 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
MSH3P20585 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.35■□□□□ 0.53
MSH3P20585 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.35■□□□□ 0.53
MSH3P20585 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.35■□□□□ 0.53
MSH3P20585 FAM210CP-201ENST00000445714 574 ntBASIC18.35■□□□□ 0.53
MSH3P20585 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.35■□□□□ 0.53
MSH3P20585 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
MSH3P20585 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
MSH3P20585 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.34■□□□□ 0.53
MSH3P20585 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
MSH3P20585 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.34■□□□□ 0.53
MSH3P20585 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
MSH3P20585 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 AL499627.1-201ENST00000569373 2188 ntBASIC18.34■□□□□ 0.53
MSH3P20585 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
MSH3P20585 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms