Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A2P08572 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 SDHAP2-201ENST00000455183 2001 ntBASIC18.54■□□□□ 0.56
COL4A2P08572 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.54■□□□□ 0.56
COL4A2P08572 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A2P08572 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL4A2P08572 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A2P08572 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A2P08572 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.54■□□□□ 0.56
COL4A2P08572 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A2P08572 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A2P08572 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.54■□□□□ 0.56
COL4A2P08572 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A2P08572 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.54■□□□□ 0.56
COL4A2P08572 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.54■□□□□ 0.56
COL4A2P08572 AL139288.1-201ENST00000623748 933 ntBASIC18.54■□□□□ 0.56
COL4A2P08572 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL4A2P08572 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
COL4A2P08572 PMS2P7-201ENST00000506558 1336 ntBASIC18.53■□□□□ 0.56
COL4A2P08572 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A2P08572 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL4A2P08572 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A2P08572 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.53■□□□□ 0.56
COL4A2P08572 ABCD1P5-201ENST00000445663 754 ntBASIC18.53■□□□□ 0.56
COL4A2P08572 AC132008.2-207ENST00000454517 770 ntBASIC18.53■□□□□ 0.56
COL4A2P08572 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A2P08572 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A2P08572 AC083906.6-201ENST00000641366 219 ntBASIC18.53■□□□□ 0.56
COL4A2P08572 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.53■□□□□ 0.56
COL4A2P08572 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.53■□□□□ 0.56
COL4A2P08572 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL4A2P08572 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.53■□□□□ 0.56
COL4A2P08572 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
COL4A2P08572 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A2P08572 AC125634.1-201ENST00000438758 1403 ntBASIC18.52■□□□□ 0.56
COL4A2P08572 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A2P08572 RPS2P1-201ENST00000434010 821 ntBASIC18.52■□□□□ 0.56
COL4A2P08572 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.52■□□□□ 0.56
COL4A2P08572 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A2P08572 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.52■□□□□ 0.56
COL4A2P08572 AC093909.1-201ENST00000504731 1122 ntBASIC18.52■□□□□ 0.56
COL4A2P08572 AC116407.3-201ENST00000623905 1129 ntBASIC18.52■□□□□ 0.56
COL4A2P08572 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
COL4A2P08572 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
COL4A2P08572 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.52■□□□□ 0.56
COL4A2P08572 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.52■□□□□ 0.56
COL4A2P08572 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 AL161938.1-201ENST00000569833 2180 ntBASIC18.52■□□□□ 0.56
COL4A2P08572 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL4A2P08572 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
COL4A2P08572 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.52■□□□□ 0.55
COL4A2P08572 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.52■□□□□ 0.55
COL4A2P08572 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.52■□□□□ 0.55
COL4A2P08572 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.52■□□□□ 0.55
COL4A2P08572 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 AC009533.2-201ENST00000543664 586 ntBASIC18.52■□□□□ 0.55
COL4A2P08572 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.52■□□□□ 0.55
COL4A2P08572 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 AC025062.2-201ENST00000605477 670 ntBASIC18.52■□□□□ 0.55
COL4A2P08572 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL4A2P08572 AC009154.2-201ENST00000621177 724 ntBASIC18.52■□□□□ 0.55
COL4A2P08572 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.52■□□□□ 0.55
COL4A2P08572 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL4A2P08572 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.51■□□□□ 0.55
COL4A2P08572 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms