Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 RPS29-206ENST00000557111 488 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 AC083906.6-201ENST00000641366 219 ntBASIC11.47□□□□□ -0.57
APOBP04114 AC079781.4-201ENST00000641908 219 ntBASIC11.47□□□□□ -0.57
APOBP04114 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 KRT18P28-201ENST00000453838 1332 ntBASIC11.47□□□□□ -0.57
APOBP04114 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC11.47□□□□□ -0.57
APOBP04114 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC11.47□□□□□ -0.57
APOBP04114 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 CYP51A1P1-201ENST00000492267 1507 ntBASIC11.47□□□□□ -0.57
APOBP04114 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC11.47□□□□□ -0.57
APOBP04114 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC11.47□□□□□ -0.57
APOBP04114 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 COX5A-206ENST00000568783 571 ntTSL 3 BASIC11.47□□□□□ -0.57
APOBP04114 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC11.47□□□□□ -0.57
APOBP04114 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 AC002310.6-201ENST00000624451 1377 ntBASIC11.47□□□□□ -0.57
APOBP04114 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
APOBP04114 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.47□□□□□ -0.57
APOBP04114 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC11.47□□□□□ -0.57
APOBP04114 AL137060.1-201ENST00000618151 2648 ntBASIC11.47□□□□□ -0.57
APOBP04114 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC11.46□□□□□ -0.57
APOBP04114 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC11.46□□□□□ -0.57
APOBP04114 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
APOBP04114 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC11.46□□□□□ -0.57
APOBP04114 CTNS-203ENST00000399306 803 ntTSL 3 BASIC11.46□□□□□ -0.57
APOBP04114 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC11.46□□□□□ -0.57
APOBP04114 MEG3-211ENST00000452514 461 ntTSL 3 BASIC11.46□□□□□ -0.57
APOBP04114 AC108751.1-201ENST00000490852 363 ntBASIC11.46□□□□□ -0.57
APOBP04114 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 AC092364.2-202ENST00000597012 1073 ntBASIC11.46□□□□□ -0.57
APOBP04114 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC11.46□□□□□ -0.57
APOBP04114 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC11.46□□□□□ -0.57
APOBP04114 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
APOBP04114 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC11.46□□□□□ -0.57
APOBP04114 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC11.46□□□□□ -0.57
APOBP04114 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC11.46□□□□□ -0.58
APOBP04114 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 GABARAPL3-202ENST00000624044 1851 ntBASIC11.46□□□□□ -0.58
APOBP04114 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC11.46□□□□□ -0.58
APOBP04114 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.46□□□□□ -0.58
APOBP04114 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 HLA-J-201ENST00000462773 1622 ntBASIC11.46□□□□□ -0.58
APOBP04114 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
APOBP04114 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC11.46□□□□□ -0.58
APOBP04114 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC11.45□□□□□ -0.58
APOBP04114 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC11.45□□□□□ -0.58
APOBP04114 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 AC073592.4-201ENST00000623827 446 ntBASIC11.45□□□□□ -0.58
APOBP04114 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC11.45□□□□□ -0.58
APOBP04114 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
APOBP04114 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 INIP-202ENST00000374236 874 ntTSL 2 BASIC11.45□□□□□ -0.58
APOBP04114 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
APOBP04114 MIR149-201ENST00000384879 89 ntBASIC11.45□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms