Protein–RNA interactions for Protein: P03886

MT-ND1, NADH-ubiquinone oxidoreductase chain 1, humanhuman

Predictions only

Length 318 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND1P03886 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.43■□□□□ 0.38
MT-ND1P03886 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MT-ND1P03886 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MT-ND1P03886 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MT-ND1P03886 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
MT-ND1P03886 NBPF21P-201ENST00000425093 1451 ntBASIC17.42■□□□□ 0.38
MT-ND1P03886 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.42■□□□□ 0.38
MT-ND1P03886 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
MT-ND1P03886 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
MT-ND1P03886 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
MT-ND1P03886 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 PRORSD1P-202ENST00000563365 2154 ntBASIC17.41■□□□□ 0.38
MT-ND1P03886 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC17.41■□□□□ 0.38
MT-ND1P03886 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.41■□□□□ 0.38
MT-ND1P03886 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.41■□□□□ 0.38
MT-ND1P03886 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
MT-ND1P03886 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.41■□□□□ 0.38
MT-ND1P03886 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
MT-ND1P03886 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
MT-ND1P03886 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.4■□□□□ 0.38
MT-ND1P03886 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.4■□□□□ 0.38
MT-ND1P03886 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.4■□□□□ 0.38
MT-ND1P03886 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.4■□□□□ 0.38
MT-ND1P03886 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.4■□□□□ 0.38
MT-ND1P03886 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.4■□□□□ 0.38
MT-ND1P03886 KRT17P3-201ENST00000420566 1262 ntBASIC17.4■□□□□ 0.38
MT-ND1P03886 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.4■□□□□ 0.38
MT-ND1P03886 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MT-ND1P03886 AP003097.1-201ENST00000530657 1135 ntBASIC17.4■□□□□ 0.38
MT-ND1P03886 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.4■□□□□ 0.38
MT-ND1P03886 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms