Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CPSF3-204ENST00000489403 688 ntTSL 513.72□□□□□ -0.214e-7■■■■■ 133.7
SF3B1O75533 CREB5-204ENST00000396300 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.214e-7■■■■■ 133.7
SF3B1O75533 CHN2-213ENST00000439384 578 ntTSL 513.69□□□□□ -0.224e-7■■■■■ 133.7
SF3B1O75533 AC120114.4-201ENST00000623731 2194 ntBASIC13.69□□□□□ -0.224e-7■■■■■ 133.7
SF3B1O75533 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.224e-7■■■■■ 133.7
SF3B1O75533 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.224e-7■■■■■ 133.7
SF3B1O75533 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.234e-7■■■■■ 133.7
SF3B1O75533 COASY-210ENST00000588757 574 ntTSL 413.59□□□□□ -0.234e-7■■■■■ 133.7
SF3B1O75533 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.234e-7■■■■■ 133.7
SF3B1O75533 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC13.58□□□□□ -0.234e-7■■■■■ 133.7
SF3B1O75533 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC13.58□□□□□ -0.244e-7■■■■■ 133.7
SF3B1O75533 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC13.56□□□□□ -0.244e-7■■■■■ 133.7
SF3B1O75533 MYDGF-204ENST00000599761 463 ntTSL 313.54□□□□□ -0.244e-7■■■■■ 133.7
SF3B1O75533 GATS-203ENST00000414997 549 ntTSL 413.52□□□□□ -0.254e-7■■■■■ 133.7
SF3B1O75533 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.254e-7■■■■■ 133.7
SF3B1O75533 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC13.5□□□□□ -0.254e-7■■■■■ 133.7
SF3B1O75533 LMLN-205ENST00000451139 5998 ntTSL 513.48□□□□□ -0.254e-7■■■■■ 133.7
SF3B1O75533 ATP11A-206ENST00000419631 2446 ntTSL 313.44□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC13.43□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 NIPA1-205ENST00000560069 575 ntTSL 413.42□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC13.42□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 CRTC3-213ENST00000561255 520 ntTSL 513.41□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 PES1-205ENST00000405677 2708 ntTSL 2 BASIC13.4□□□□□ -0.264e-7■■■■■ 133.7
SF3B1O75533 SLC37A1-202ENST00000398341 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 AC079062.1-205ENST00000582571 744 ntTSL 313.36□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 CACNB1-202ENST00000394303 3742 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 WAPL-206ENST00000618527 6152 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 PTCH1-222ENST00000551425 241 ntTSL 1 (best)13.34□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 CRTC3-203ENST00000558005 570 ntTSL 413.34□□□□□ -0.274e-7■■■■■ 133.7
SF3B1O75533 TRAPPC2L-207ENST00000564404 915 ntTSL 313.3□□□□□ -0.284e-7■■■■■ 133.7
SF3B1O75533 COASY-201ENST00000393818 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.284e-7■■■■■ 133.7
SF3B1O75533 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.294e-7■■■■■ 133.7
SF3B1O75533 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC13.26□□□□□ -0.294e-7■■■■■ 133.7
SF3B1O75533 BTBD8-202ENST00000370382 1616 ntTSL 1 (best)13.26□□□□□ -0.294e-7■■■■■ 133.7
SF3B1O75533 MACF1-230ENST00000530275 5767 nt13.2□□□□□ -0.34e-7■■■■■ 133.7
SF3B1O75533 TRAPPC2L-211ENST00000565504 3102 ntTSL 2 BASIC13.2□□□□□ -0.34e-7■■■■■ 133.7
SF3B1O75533 IQUB-202ENST00000466202 3296 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.34e-7■■■■■ 133.7
SF3B1O75533 INPPL1-203ENST00000535985 353 ntTSL 213.14□□□□□ -0.314e-7■■■■■ 133.7
SF3B1O75533 JPX-207ENST00000602772 1692 ntTSL 1 (best) BASIC13.14□□□□□ -0.314e-7■■■■■ 133.7
SF3B1O75533 MIGA1-204ENST00000477627 500 ntTSL 313.13□□□□□ -0.314e-7■■■■■ 133.7
SF3B1O75533 DNPEP-214ENST00000490371 555 ntTSL 513.09□□□□□ -0.314e-7■■■■■ 133.7
SF3B1O75533 ASB7-201ENST00000332783 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.324e-7■■■■■ 133.7
SF3B1O75533 TAGLN-208ENST00000533863 3298 ntTSL 1 (best)13.04□□□□□ -0.324e-7■■■■■ 133.7
SF3B1O75533 MAPT-202ENST00000334239 1107 ntTSL 1 (best) BASIC13.03□□□□□ -0.324e-7■■■■■ 133.7
SF3B1O75533 FLOT1-206ENST00000445853 792 ntTSL 1 (best)13.02□□□□□ -0.334e-7■■■■■ 133.7
SF3B1O75533 SRGAP2-213ENST00000605242 566 ntTSL 413.02□□□□□ -0.334e-7■■■■■ 133.7
SF3B1O75533 MRPL11-202ENST00000329819 922 ntTSL 2 BASIC13.01□□□□□ -0.334e-7■■■■■ 133.7
SF3B1O75533 CACNB1-212ENST00000622445 3722 ntTSL 5 BASIC12.98□□□□□ -0.334e-7■■■■■ 133.7
SF3B1O75533 PRPF8-214ENST00000576585 2157 ntTSL 212.97□□□□□ -0.334e-7■■■■■ 133.7
SF3B1O75533 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.344e-7■■■■■ 133.7
SF3B1O75533 MTFR1-213ENST00000523222 576 ntTSL 412.92□□□□□ -0.344e-7■■■■■ 133.7
SF3B1O75533 MTFR1-210ENST00000522239 570 ntTSL 412.92□□□□□ -0.344e-7■■■■■ 133.7
SF3B1O75533 MTFR1-212ENST00000523170 537 ntTSL 412.92□□□□□ -0.344e-7■■■■■ 133.7
SF3B1O75533 TRAPPC2L-202ENST00000561840 558 ntTSL 5 BASIC12.87□□□□□ -0.354e-7■■■■■ 133.7
SF3B1O75533 DPCD-201ENST00000370147 641 ntTSL 2 BASIC12.82□□□□□ -0.364e-7■■■■■ 133.7
SF3B1O75533 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC12.78□□□□□ -0.364e-7■■■■■ 133.7
SF3B1O75533 PES1-203ENST00000402281 2760 ntTSL 2 BASIC12.78□□□□□ -0.364e-7■■■■■ 133.7
SF3B1O75533 IQUB-205ENST00000484508 3024 ntTSL 212.78□□□□□ -0.364e-7■■■■■ 133.7
SF3B1O75533 TAGLN2-205ENST00000478033 1051 ntTSL 212.77□□□□□ -0.374e-7■■■■■ 133.7
SF3B1O75533 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.374e-7■■■■■ 133.7
SF3B1O75533 FLOT1-203ENST00000416018 592 ntTSL 312.7□□□□□ -0.384e-7■■■■■ 133.7
SF3B1O75533 TSEN2-204ENST00000415684 2279 ntTSL 5 BASIC12.65□□□□□ -0.384e-7■■■■■ 133.7
SF3B1O75533 CCM2-213ENST00000480658 1136 ntTSL 212.63□□□□□ -0.394e-7■■■■■ 133.7
SF3B1O75533 TRAPPC2L-214ENST00000568583 801 ntTSL 3 BASIC12.62□□□□□ -0.394e-7■■■■■ 133.7
SF3B1O75533 IFT80-212ENST00000475677 529 ntTSL 312.61□□□□□ -0.394e-7■■■■■ 133.7
SF3B1O75533 ANXA5-203ENST00000506395 1606 ntTSL 512.6□□□□□ -0.394e-7■■■■■ 133.7
SF3B1O75533 MGRN1-215ENST00000591895 556 ntTSL 412.59□□□□□ -0.394e-7■■■■■ 133.7
SF3B1O75533 APOL4-202ENST00000332987 1825 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.44e-7■■■■■ 133.7
SF3B1O75533 ST6GAL1-219ENST00000468614 642 ntTSL 212.52□□□□□ -0.414e-7■■■■■ 133.7
SF3B1O75533 AL049836.1-201ENST00000553270 539 ntTSL 3 BASIC12.45□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 BCCIP-201ENST00000278100 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 MAPT-212ENST00000571311 544 ntTSL 412.45□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 MPP2-221ENST00000625880 4668 ntTSL 5 BASIC12.44□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 ATP2A3-213ENST00000574202 230 ntTSL 212.42□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 APOL4-204ENST00000397275 845 ntTSL 1 (best) BASIC12.42□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 AC104123.1-201ENST00000502645 473 ntTSL 5 BASIC12.4□□□□□ -0.424e-7■■■■■ 133.7
SF3B1O75533 PRKAB2-202ENST00000474939 578 ntTSL 412.39□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 NFATC1-202ENST00000318065 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 TXNDC11-203ENST00000570917 1199 ntTSL 512.37□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 KCTD13-203ENST00000563264 440 ntTSL 212.37□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 WDPCP-209ENST00000418148 576 ntTSL 412.36□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 PANK2-203ENST00000464452 771 ntTSL 312.36□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 CRY2-204ENST00000488962 543 ntTSL 212.34□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 MGRN1-212ENST00000590457 552 ntTSL 312.34□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 MGRN1-207ENST00000587145 577 ntTSL 412.34□□□□□ -0.434e-7■■■■■ 133.7
SF3B1O75533 MON1B-207ENST00000566455 2864 ntTSL 212.32□□□□□ -0.444e-6■■■■■ 133.7
SF3B1O75533 DPCD-203ENST00000434727 369 ntTSL 312.31□□□□□ -0.444e-7■■■■■ 133.7
SF3B1O75533 DPCD-205ENST00000475443 731 ntTSL 312.31□□□□□ -0.444e-7■■■■■ 133.7
SF3B1O75533 L3MBTL1-217ENST00000485334 562 ntTSL 412.3□□□□□ -0.444e-7■■■■■ 133.7
SF3B1O75533 FNBP1-206ENST00000462766 698 ntTSL 512.28□□□□□ -0.444e-7■■■■■ 133.7
SF3B1O75533 WASHC5-201ENST00000318410 4187 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.454e-7■■■■■ 133.7
SF3B1O75533 MAPT-211ENST00000570299 889 ntTSL 312.23□□□□□ -0.454e-7■■■■■ 133.7
SF3B1O75533 RNF213-202ENST00000411702 6428 ntTSL 212.23□□□□□ -0.454e-6■■■■■ 133.7
SF3B1O75533 MPP2-203ENST00000461854 3462 ntTSL 1 (best) BASIC12.22□□□□□ -0.454e-7■■■■■ 133.7
SF3B1O75533 DDX41-216ENST00000513562 552 ntTSL 412.21□□□□□ -0.454e-7■■■■■ 133.7
SF3B1O75533 C12orf57-201ENST00000229281 560 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.464e-7■■■■■ 133.7
SF3B1O75533 PDIA5-206ENST00000485208 499 ntTSL 512.17□□□□□ -0.464e-7■■■■■ 133.7
Retrieved 100 of 46,956 protein–RNA pairs in 1147.9 ms