Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 AC098934.4-201ENST00000564127 592 ntBASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 AL138781.1-201ENST00000566567 1274 ntBASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PRORSD1P-202ENST00000563365 2154 ntBASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
UBE2D4Q9Y2X8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 NFIC-211ENST00000641145 8399 ntBASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 PARL-206ENST00000435888 1098 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 RCC2P3-201ENST00000418112 1537 ntBASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 AC139713.2-201ENST00000641328 2723 ntBASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC12.87□□□□□ -0.35
UBE2D4Q9Y2X8 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC12.87□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms