Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 CRYGFP-201ENST00000418459 633 ntBASIC16.52■□□□□ 0.24
VSX1Q9NZR4 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
VSX1Q9NZR4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 AC034236.2-201ENST00000606662 1610 ntBASIC16.52■□□□□ 0.23
VSX1Q9NZR4 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VSX1Q9NZR4 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
VSX1Q9NZR4 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 AP003071.4-201ENST00000562276 1284 ntBASIC16.5■□□□□ 0.23
VSX1Q9NZR4 MIR3180-5-201ENST00000583743 153 ntBASIC16.5■□□□□ 0.23
VSX1Q9NZR4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VSX1Q9NZR4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VSX1Q9NZR4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms