Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.67■□□□□ 0.42
PIF1Q9H611 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.67■□□□□ 0.42
PIF1Q9H611 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
PIF1Q9H611 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PIF1Q9H611 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
PIF1Q9H611 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PIF1Q9H611 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
PIF1Q9H611 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 AC068587.9-201ENST00000641814 219 ntBASIC17.66■□□□□ 0.42
PIF1Q9H611 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PIF1Q9H611 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 AC139713.2-201ENST00000641328 2723 ntBASIC17.66■□□□□ 0.42
PIF1Q9H611 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.66■□□□□ 0.42
PIF1Q9H611 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.66■□□□□ 0.42
PIF1Q9H611 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PIF1Q9H611 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC17.65■□□□□ 0.42
PIF1Q9H611 KRT17P3-201ENST00000420566 1262 ntBASIC17.65■□□□□ 0.42
PIF1Q9H611 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.65■□□□□ 0.42
PIF1Q9H611 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.65■□□□□ 0.42
PIF1Q9H611 AC004264.1-201ENST00000608354 794 ntBASIC17.65■□□□□ 0.42
PIF1Q9H611 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.65■□□□□ 0.42
PIF1Q9H611 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
PIF1Q9H611 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PIF1Q9H611 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms