Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 AC134043.2-201ENST00000624206 2238 ntBASIC19.96■□□□□ 0.79
CCDC42Q96M95 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 REXO1L9P-201ENST00000604264 2108 ntBASIC19.96■□□□□ 0.79
CCDC42Q96M95 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 CKBP1-201ENST00000565489 1086 ntBASIC19.96■□□□□ 0.79
CCDC42Q96M95 RN7SL471P-201ENST00000580476 299 ntBASIC19.96■□□□□ 0.79
CCDC42Q96M95 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.96■□□□□ 0.79
CCDC42Q96M95 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC42Q96M95 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC42Q96M95 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 AC011298.2-201ENST00000617989 482 ntBASIC19.95■□□□□ 0.78
CCDC42Q96M95 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC42Q96M95 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC42Q96M95 GNAS-203ENST00000306120 1878 ntBASIC19.94■□□□□ 0.78
CCDC42Q96M95 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 ESRRAP1-201ENST00000400596 1257 ntBASIC19.94■□□□□ 0.78
CCDC42Q96M95 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
CCDC42Q96M95 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC42Q96M95 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 SLC25A6P5-201ENST00000435663 894 ntBASIC19.93■□□□□ 0.78
CCDC42Q96M95 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 AL031985.4-201ENST00000642138 673 ntBASIC19.93■□□□□ 0.78
CCDC42Q96M95 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC42Q96M95 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 AL109659.2-201ENST00000606809 1674 ntBASIC19.93■□□□□ 0.78
CCDC42Q96M95 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC42Q96M95 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms