Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
DEPDC4Q8N2C3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
DEPDC4Q8N2C3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.21■□□□□ 0.34
DEPDC4Q8N2C3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.21■□□□□ 0.34
DEPDC4Q8N2C3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
DEPDC4Q8N2C3 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 NBPF21P-201ENST00000425093 1451 ntBASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 SERF2-207ENST00000409614 582 ntTSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
DEPDC4Q8N2C3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 AC012618.2-201ENST00000428058 849 ntBASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 SLC25A6P5-201ENST00000435663 894 ntBASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
DEPDC4Q8N2C3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms