Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 AC067930.6-201ENST00000623257 4947 ntBASIC11.55□□□□□ -0.56
LINC00643Q86TS7 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 AP004607.4-201ENST00000530158 1459 ntBASIC11.55□□□□□ -0.56
LINC00643Q86TS7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 AL603756.1-201ENST00000606511 2163 ntBASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
LINC00643Q86TS7 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 AGGF1P2-201ENST00000426656 2106 ntBASIC11.54□□□□□ -0.56
LINC00643Q86TS7 FLJ13224-201ENST00000313737 1514 ntBASIC11.54□□□□□ -0.56
LINC00643Q86TS7 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC11.54□□□□□ -0.56
LINC00643Q86TS7 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 AC106886.4-201ENST00000623557 2502 ntBASIC11.53□□□□□ -0.56
LINC00643Q86TS7 POR-209ENST00000439269 1858 ntTSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 MIR4281-201ENST00000580852 62 ntBASIC11.53□□□□□ -0.56
LINC00643Q86TS7 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC11.53□□□□□ -0.56
LINC00643Q86TS7 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC11.53□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms