Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 CCR12P-201ENST00000446203 998 ntBASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 MIR3180-5-201ENST00000583743 153 ntBASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 CR769767.2-201ENST00000622735 460 ntBASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.6■□□□□ 0.25
NHLRC1Q6VVB1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
NHLRC1Q6VVB1 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.58■□□□□ 0.25
NHLRC1Q6VVB1 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 FAM87A-204ENST00000613235 858 ntBASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 AC036111.1-201ENST00000533973 1582 ntBASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
NHLRC1Q6VVB1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
NHLRC1Q6VVB1 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms