Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 CROCCP1-201ENST00000426910 5675 ntBASIC13.08□□□□□ -0.32
RPL39P62891 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
RPL39P62891 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
RPL39P62891 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC13.08□□□□□ -0.32
RPL39P62891 SLC25A6P5-201ENST00000435663 894 ntBASIC13.08□□□□□ -0.32
RPL39P62891 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
RPL39P62891 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.08□□□□□ -0.32
RPL39P62891 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.32
RPL39P62891 AC068587.9-201ENST00000641814 219 ntBASIC13.08□□□□□ -0.32
RPL39P62891 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.08□□□□□ -0.32
RPL39P62891 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.08□□□□□ -0.32
RPL39P62891 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
RPL39P62891 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RPL39P62891 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 AC092368.3-202ENST00000574180 1591 ntBASIC13.07□□□□□ -0.32
RPL39P62891 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
RPL39P62891 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC13.07□□□□□ -0.32
RPL39P62891 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.07□□□□□ -0.32
RPL39P62891 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 ABHD17AP6-201ENST00000458502 1044 ntBASIC13.07□□□□□ -0.32
RPL39P62891 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC13.07□□□□□ -0.32
RPL39P62891 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
RPL39P62891 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
RPL39P62891 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
RPL39P62891 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC13.07□□□□□ -0.32
RPL39P62891 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RPL39P62891 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.06□□□□□ -0.32
RPL39P62891 AC112777.1-201ENST00000540175 1423 ntBASIC13.06□□□□□ -0.32
RPL39P62891 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13.06□□□□□ -0.32
RPL39P62891 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
RPL39P62891 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 TREX2-204ENST00000370212 861 ntTSL 5 BASIC13.06□□□□□ -0.32
RPL39P62891 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
RPL39P62891 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
RPL39P62891 REXO2-208ENST00000539754 791 ntTSL 2 BASIC13.06□□□□□ -0.32
RPL39P62891 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC13.06□□□□□ -0.32
RPL39P62891 RGMA-211ENST00000557420 989 ntTSL 3 BASIC13.06□□□□□ -0.32
RPL39P62891 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC13.06□□□□□ -0.32
RPL39P62891 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC13.06□□□□□ -0.32
RPL39P62891 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms