Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HNF4AP41235 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HNF4AP41235 AC135050.7-201ENST00000624508 2218 ntBASIC17.93■□□□□ 0.46
HNF4AP41235 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 ECEL1P2-202ENST00000465689 757 ntBASIC17.93■□□□□ 0.46
HNF4AP41235 AP003041.3-201ENST00000527151 707 ntBASIC17.93■□□□□ 0.46
HNF4AP41235 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.93■□□□□ 0.46
HNF4AP41235 AL353719.1-201ENST00000566847 864 ntBASIC17.93■□□□□ 0.46
HNF4AP41235 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HNF4AP41235 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.93■□□□□ 0.46
HNF4AP41235 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.93■□□□□ 0.46
HNF4AP41235 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.93■□□□□ 0.46
HNF4AP41235 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HNF4AP41235 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.93■□□□□ 0.46
HNF4AP41235 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HNF4AP41235 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.92■□□□□ 0.46
HNF4AP41235 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 MYLKP1-201ENST00000509077 1580 ntBASIC17.92■□□□□ 0.46
HNF4AP41235 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.92■□□□□ 0.46
HNF4AP41235 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 BICD1-207ENST00000551848 1962 ntBASIC17.92■□□□□ 0.46
HNF4AP41235 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.92■□□□□ 0.46
HNF4AP41235 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
HNF4AP41235 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.92■□□□□ 0.46
HNF4AP41235 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 EGLN1P1-201ENST00000531623 762 ntBASIC17.92■□□□□ 0.46
HNF4AP41235 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.92■□□□□ 0.46
HNF4AP41235 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.92■□□□□ 0.46
HNF4AP41235 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HNF4AP41235 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.92■□□□□ 0.46
HNF4AP41235 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
HNF4AP41235 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HNF4AP41235 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 AL162741.1-201ENST00000565563 1558 ntBASIC17.91■□□□□ 0.46
HNF4AP41235 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HNF4AP41235 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.91■□□□□ 0.46
HNF4AP41235 TSPY14P-201ENST00000303979 915 ntBASIC17.91■□□□□ 0.46
HNF4AP41235 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 AC007663.1-201ENST00000438948 1240 ntBASIC17.91■□□□□ 0.46
HNF4AP41235 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.91■□□□□ 0.46
HNF4AP41235 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.91■□□□□ 0.46
HNF4AP41235 MIR4674-201ENST00000582457 87 ntBASIC17.91■□□□□ 0.46
HNF4AP41235 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
HNF4AP41235 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.91■□□□□ 0.46
HNF4AP41235 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.91■□□□□ 0.46
HNF4AP41235 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.91■□□□□ 0.46
HNF4AP41235 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HNF4AP41235 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.9■□□□□ 0.46
HNF4AP41235 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HNF4AP41235 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.9■□□□□ 0.46
HNF4AP41235 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
HNF4AP41235 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.9■□□□□ 0.46
HNF4AP41235 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.9■□□□□ 0.46
HNF4AP41235 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HNF4AP41235 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.9■□□□□ 0.46
HNF4AP41235 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HNF4AP41235 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms