Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.7■□□□□ 0.58
RPA3P35244 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RPA3P35244 AC093677.2-201ENST00000600169 1863 ntBASIC18.7■□□□□ 0.58
RPA3P35244 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RPA3P35244 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.7■□□□□ 0.58
RPA3P35244 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.7■□□□□ 0.58
RPA3P35244 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RPA3P35244 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RPA3P35244 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.7■□□□□ 0.58
RPA3P35244 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.69■□□□□ 0.58
RPA3P35244 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RPA3P35244 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
RPA3P35244 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
RPA3P35244 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.69■□□□□ 0.58
RPA3P35244 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.69■□□□□ 0.58
RPA3P35244 AL445675.2-201ENST00000620291 557 ntBASIC18.69■□□□□ 0.58
RPA3P35244 AC131212.4-201ENST00000623606 975 ntBASIC18.69■□□□□ 0.58
RPA3P35244 CR392000.1-201ENST00000624770 1228 ntBASIC18.69■□□□□ 0.58
RPA3P35244 AC068587.9-201ENST00000641814 219 ntBASIC18.69■□□□□ 0.58
RPA3P35244 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.69■□□□□ 0.58
RPA3P35244 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.69■□□□□ 0.58
RPA3P35244 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.69■□□□□ 0.58
RPA3P35244 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.69■□□□□ 0.58
RPA3P35244 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.69■□□□□ 0.58
RPA3P35244 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
RPA3P35244 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RPA3P35244 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RPA3P35244 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RPA3P35244 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.68■□□□□ 0.58
RPA3P35244 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RPA3P35244 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 KRT16P1-201ENST00000399124 1418 ntBASIC18.68■□□□□ 0.58
RPA3P35244 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.68■□□□□ 0.58
RPA3P35244 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.68■□□□□ 0.58
RPA3P35244 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
RPA3P35244 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.68■□□□□ 0.58
RPA3P35244 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.68■□□□□ 0.58
RPA3P35244 AC233702.5-201ENST00000584107 538 ntBASIC18.68■□□□□ 0.58
RPA3P35244 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.68■□□□□ 0.58
RPA3P35244 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.68■□□□□ 0.58
RPA3P35244 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.68■□□□□ 0.58
RPA3P35244 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
RPA3P35244 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RPA3P35244 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.68■□□□□ 0.58
RPA3P35244 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.68■□□□□ 0.58
RPA3P35244 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RPA3P35244 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.68■□□□□ 0.58
RPA3P35244 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.67■□□□□ 0.58
RPA3P35244 AC138028.4-201ENST00000564984 1845 ntBASIC18.67■□□□□ 0.58
RPA3P35244 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.67■□□□□ 0.58
RPA3P35244 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.67■□□□□ 0.58
RPA3P35244 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.67■□□□□ 0.58
RPA3P35244 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.67■□□□□ 0.58
RPA3P35244 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.67■□□□□ 0.58
RPA3P35244 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RPA3P35244 Z99916.2-201ENST00000604037 246 ntBASIC18.67■□□□□ 0.58
RPA3P35244 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.67■□□□□ 0.58
RPA3P35244 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms