Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CLDN9O95484 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.89■□□□□ 0.46
CLDN9O95484 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.89■□□□□ 0.46
CLDN9O95484 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 AC018470.1-201ENST00000624790 3129 ntBASIC17.89■□□□□ 0.45
CLDN9O95484 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN9O95484 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.89■□□□□ 0.45
CLDN9O95484 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN9O95484 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
CLDN9O95484 FITM1-202ENST00000559294 800 ntBASIC17.89■□□□□ 0.45
CLDN9O95484 AL353719.1-201ENST00000566847 864 ntBASIC17.89■□□□□ 0.45
CLDN9O95484 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN9O95484 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.89■□□□□ 0.45
CLDN9O95484 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN9O95484 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.89■□□□□ 0.45
CLDN9O95484 KRT8P50-201ENST00000562022 1438 ntBASIC17.89■□□□□ 0.45
CLDN9O95484 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CLDN9O95484 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CLDN9O95484 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.88■□□□□ 0.45
CLDN9O95484 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.88■□□□□ 0.45
CLDN9O95484 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
CLDN9O95484 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.88■□□□□ 0.45
CLDN9O95484 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.88■□□□□ 0.45
CLDN9O95484 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.88■□□□□ 0.45
CLDN9O95484 CCR12P-201ENST00000446203 998 ntBASIC17.88■□□□□ 0.45
CLDN9O95484 AP003041.3-201ENST00000527151 707 ntBASIC17.88■□□□□ 0.45
CLDN9O95484 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.88■□□□□ 0.45
CLDN9O95484 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
CLDN9O95484 AP000525.1-201ENST00000608286 694 ntBASIC17.88■□□□□ 0.45
CLDN9O95484 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 KRT17P2-201ENST00000300992 1314 ntBASIC17.88■□□□□ 0.45
CLDN9O95484 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.88■□□□□ 0.45
CLDN9O95484 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
CLDN9O95484 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CLDN9O95484 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.88■□□□□ 0.45
CLDN9O95484 AC036111.1-201ENST00000533973 1582 ntBASIC17.87■□□□□ 0.45
CLDN9O95484 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.87■□□□□ 0.45
CLDN9O95484 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 AC093677.2-201ENST00000600169 1863 ntBASIC17.87■□□□□ 0.45
CLDN9O95484 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN9O95484 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN9O95484 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 SNORA78-201ENST00000459373 127 ntBASIC17.87■□□□□ 0.45
CLDN9O95484 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN9O95484 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.87■□□□□ 0.45
CLDN9O95484 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
CLDN9O95484 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CLDN9O95484 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CLDN9O95484 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CLDN9O95484 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN9O95484 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.86■□□□□ 0.45
CLDN9O95484 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 HTR7P1-202ENST00000624664 4411 ntBASIC17.86■□□□□ 0.45
CLDN9O95484 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CLDN9O95484 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms