Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.05■□□□□ 0.48
SDC3O75056 Z69720.1-201ENST00000601483 472 ntBASIC18.05■□□□□ 0.48
SDC3O75056 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SDC3O75056 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SDC3O75056 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SDC3O75056 AC093484.2-201ENST00000580996 2166 ntBASIC18.04■□□□□ 0.48
SDC3O75056 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
SDC3O75056 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.04■□□□□ 0.48
SDC3O75056 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.04■□□□□ 0.48
SDC3O75056 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.04■□□□□ 0.48
SDC3O75056 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.04■□□□□ 0.48
SDC3O75056 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
SDC3O75056 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.04■□□□□ 0.48
SDC3O75056 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
SDC3O75056 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
SDC3O75056 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.04■□□□□ 0.48
SDC3O75056 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SDC3O75056 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.03■□□□□ 0.48
SDC3O75056 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SDC3O75056 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
SDC3O75056 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SDC3O75056 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SDC3O75056 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.03■□□□□ 0.48
SDC3O75056 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.03■□□□□ 0.48
SDC3O75056 GUSBP12-201ENST00000513727 720 ntBASIC18.03■□□□□ 0.48
SDC3O75056 AC104692.2-201ENST00000603054 253 ntBASIC18.03■□□□□ 0.48
SDC3O75056 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.03■□□□□ 0.48
SDC3O75056 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.03■□□□□ 0.48
SDC3O75056 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SDC3O75056 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SDC3O75056 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.03■□□□□ 0.48
SDC3O75056 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SDC3O75056 HEIH-201ENST00000623091 1652 ntBASIC18.03■□□□□ 0.48
SDC3O75056 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
SDC3O75056 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.02■□□□□ 0.48
SDC3O75056 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.02■□□□□ 0.48
SDC3O75056 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.02■□□□□ 0.48
SDC3O75056 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.02■□□□□ 0.48
SDC3O75056 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.02■□□□□ 0.48
SDC3O75056 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.02■□□□□ 0.48
SDC3O75056 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.02■□□□□ 0.48
SDC3O75056 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.02■□□□□ 0.48
SDC3O75056 KRT8P50-201ENST00000562022 1438 ntBASIC18.02■□□□□ 0.48
SDC3O75056 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SDC3O75056 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.02■□□□□ 0.48
SDC3O75056 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.02■□□□□ 0.48
SDC3O75056 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SDC3O75056 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SDC3O75056 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SDC3O75056 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SDC3O75056 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.02■□□□□ 0.47
SDC3O75056 AL353692.3-201ENST00000407031 1396 ntBASIC18.02■□□□□ 0.47
SDC3O75056 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SDC3O75056 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.02■□□□□ 0.47
SDC3O75056 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms