Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SDCBPO00560 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC15.75■□□□□ 0.11
SDCBPO00560 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 HEIH-201ENST00000623091 1652 ntBASIC15.75■□□□□ 0.11
SDCBPO00560 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SDCBPO00560 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 AC135776.1-201ENST00000319817 2481 ntBASIC15.75■□□□□ 0.11
SDCBPO00560 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
SDCBPO00560 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.75■□□□□ 0.11
SDCBPO00560 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SDCBPO00560 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.75■□□□□ 0.11
SDCBPO00560 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.74■□□□□ 0.11
SDCBPO00560 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SDCBPO00560 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC15.74■□□□□ 0.11
SDCBPO00560 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.74■□□□□ 0.11
SDCBPO00560 FAM197Y4-202ENST00000622692 608 ntBASIC15.74■□□□□ 0.11
SDCBPO00560 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SDCBPO00560 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC15.74■□□□□ 0.11
SDCBPO00560 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC15.74■□□□□ 0.11
SDCBPO00560 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SDCBPO00560 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 ESPNP-201ENST00000270691 2015 ntBASIC15.73■□□□□ 0.11
SDCBPO00560 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 HR-201ENST00000312841 5351 ntTSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 HTR7P1-201ENST00000538670 1336 ntBASIC15.73■□□□□ 0.11
SDCBPO00560 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 KRT18P29-201ENST00000397031 1267 ntBASIC15.73■□□□□ 0.11
SDCBPO00560 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.73■□□□□ 0.11
SDCBPO00560 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 RPPH1-201ENST00000516869 333 ntBASIC15.73■□□□□ 0.11
SDCBPO00560 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.73■□□□□ 0.11
SDCBPO00560 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 AC131212.4-201ENST00000623606 975 ntBASIC15.73■□□□□ 0.11
SDCBPO00560 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SDCBPO00560 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.73■□□□□ 0.11
SDCBPO00560 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SDCBPO00560 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 RCC2P6-201ENST00000526625 1557 ntBASIC15.72■□□□□ 0.11
SDCBPO00560 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms