Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.27■■□□□ 1
DDX41Q9UJV9 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 ZNF444P1-201ENST00000559497 298 ntBASIC21.27■■□□□ 1
DDX41Q9UJV9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.27■■□□□ 1
DDX41Q9UJV9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.27■■□□□ 1
DDX41Q9UJV9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC21.27■■□□□ 1
DDX41Q9UJV9 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX41Q9UJV9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.27■□□□□ 0.99
DDX41Q9UJV9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.27■□□□□ 0.99
DDX41Q9UJV9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
DDX41Q9UJV9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
DDX41Q9UJV9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 AC036111.1-201ENST00000533973 1582 ntBASIC21.26■□□□□ 0.99
DDX41Q9UJV9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.26■□□□□ 0.99
DDX41Q9UJV9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 LINC01311-201ENST00000565162 1445 ntBASIC21.25■□□□□ 0.99
DDX41Q9UJV9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
DDX41Q9UJV9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 MCCD1P1-208ENST00000445732 328 ntBASIC21.24■□□□□ 0.99
DDX41Q9UJV9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 VENTXP5-201ENST00000523979 775 ntBASIC21.24■□□□□ 0.99
DDX41Q9UJV9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 MIR3180-5-201ENST00000583743 153 ntBASIC21.24■□□□□ 0.99
DDX41Q9UJV9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms