Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 AL136038.3-201ENST00000561909 1096 ntBASIC18.62■□□□□ 0.57
LHX3Q9UBR4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.62■□□□□ 0.57
LHX3Q9UBR4 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.61■□□□□ 0.57
LHX3Q9UBR4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 AC005332.1-201ENST00000577698 1310 ntBASIC18.6■□□□□ 0.57
LHX3Q9UBR4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LHX3Q9UBR4 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 AL024508.2-201ENST00000607749 1894 ntBASIC18.59■□□□□ 0.57
LHX3Q9UBR4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 MIR662-201ENST00000384847 95 ntBASIC18.59■□□□□ 0.57
LHX3Q9UBR4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 AL358472.4-201ENST00000633140 710 ntBASIC18.59■□□□□ 0.57
LHX3Q9UBR4 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LHX3Q9UBR4 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms