Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 AC104771.1-201ENST00000603335 964 ntBASIC18.29■□□□□ 0.52
MKS1Q9NXB0 AC124016.1-201ENST00000609552 612 ntBASIC18.29■□□□□ 0.52
MKS1Q9NXB0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 KRT8P50-201ENST00000562022 1438 ntBASIC18.29■□□□□ 0.52
MKS1Q9NXB0 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
MKS1Q9NXB0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 AC139713.2-201ENST00000641328 2723 ntBASIC18.28■□□□□ 0.52
MKS1Q9NXB0 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 AC011298.2-201ENST00000617989 482 ntBASIC18.28■□□□□ 0.52
MKS1Q9NXB0 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
MKS1Q9NXB0 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 AC008040.2-201ENST00000461049 708 ntBASIC18.27■□□□□ 0.52
MKS1Q9NXB0 RPS2P4-201ENST00000476944 856 ntBASIC18.27■□□□□ 0.52
MKS1Q9NXB0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
MKS1Q9NXB0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.27■□□□□ 0.51
MKS1Q9NXB0 AC034236.2-201ENST00000606662 1610 ntBASIC18.27■□□□□ 0.51
MKS1Q9NXB0 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 AC110285.5-201ENST00000611501 352 ntBASIC18.26■□□□□ 0.51
MKS1Q9NXB0 AC008622.2-201ENST00000617006 1229 ntBASIC18.26■□□□□ 0.51
MKS1Q9NXB0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MKS1Q9NXB0 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms