Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.01■□□□□ 0.95
ERCC4Q92889 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC4Q92889 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.01■□□□□ 0.95
ERCC4Q92889 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.01■□□□□ 0.95
ERCC4Q92889 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
ERCC4Q92889 ESPNP-201ENST00000270691 2015 ntBASIC21■□□□□ 0.95
ERCC4Q92889 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21■□□□□ 0.95
ERCC4Q92889 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21■□□□□ 0.95
ERCC4Q92889 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21■□□□□ 0.95
ERCC4Q92889 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ERCC4Q92889 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
ERCC4Q92889 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ERCC4Q92889 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
ERCC4Q92889 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21■□□□□ 0.95
ERCC4Q92889 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 AC011506.1-201ENST00000474329 610 ntBASIC20.99■□□□□ 0.95
ERCC4Q92889 AP002982.1-201ENST00000492365 877 ntBASIC20.99■□□□□ 0.95
ERCC4Q92889 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
ERCC4Q92889 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
ERCC4Q92889 RCC2P3-201ENST00000418112 1537 ntBASIC20.99■□□□□ 0.95
ERCC4Q92889 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ERCC4Q92889 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.98■□□□□ 0.95
ERCC4Q92889 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.98■□□□□ 0.95
ERCC4Q92889 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 AC008764.6-201ENST00000595909 2069 ntBASIC20.98■□□□□ 0.95
ERCC4Q92889 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ERCC4Q92889 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.97■□□□□ 0.95
ERCC4Q92889 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 AC004951.3-201ENST00000418645 1148 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms