Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.1■□□□□ 0.49
VRK3Q8IV63 COX11P1-201ENST00000489116 835 ntBASIC18.1■□□□□ 0.49
VRK3Q8IV63 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 AC011558.1-201ENST00000623459 338 ntBASIC18.1■□□□□ 0.49
VRK3Q8IV63 AC092865.7-201ENST00000641832 219 ntBASIC18.1■□□□□ 0.49
VRK3Q8IV63 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.1■□□□□ 0.49
VRK3Q8IV63 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VRK3Q8IV63 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 BX664615.1-201ENST00000443558 458 ntBASIC18.09■□□□□ 0.49
VRK3Q8IV63 AC104076.2-201ENST00000448912 469 ntBASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 YBX1P2-201ENST00000489612 999 ntBASIC18.09■□□□□ 0.49
VRK3Q8IV63 KRT18P21-201ENST00000515767 1272 ntBASIC18.09■□□□□ 0.49
VRK3Q8IV63 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 AC010240.3-201ENST00000607688 395 ntBASIC18.09■□□□□ 0.49
VRK3Q8IV63 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VRK3Q8IV63 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VRK3Q8IV63 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
VRK3Q8IV63 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VRK3Q8IV63 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VRK3Q8IV63 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VRK3Q8IV63 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VRK3Q8IV63 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.08■□□□□ 0.49
VRK3Q8IV63 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VRK3Q8IV63 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.08■□□□□ 0.48
VRK3Q8IV63 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms