Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH6P55285 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH6P55285 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.27■□□□□ 0.67
CDH6P55285 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
CDH6P55285 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH6P55285 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH6P55285 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH6P55285 KRT8P9-201ENST00000558927 1449 ntBASIC19.26■□□□□ 0.67
CDH6P55285 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.26■□□□□ 0.67
CDH6P55285 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH6P55285 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH6P55285 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH6P55285 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.26■□□□□ 0.67
CDH6P55285 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.26■□□□□ 0.67
CDH6P55285 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 AC007663.1-201ENST00000438948 1240 ntBASIC19.26■□□□□ 0.67
CDH6P55285 BX088651.1-201ENST00000540551 451 ntBASIC19.26■□□□□ 0.67
CDH6P55285 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH6P55285 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH6P55285 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CDH6P55285 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH6P55285 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDH6P55285 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH6P55285 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 AL354751.1-201ENST00000412768 1863 ntBASIC19.25■□□□□ 0.67
CDH6P55285 CYP2D8P-201ENST00000433633 1490 ntBASIC19.25■□□□□ 0.67
CDH6P55285 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 MMP23A-201ENST00000234610 1017 ntBASIC19.25■□□□□ 0.67
CDH6P55285 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH6P55285 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH6P55285 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH6P55285 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH6P55285 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.25■□□□□ 0.67
CDH6P55285 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CDH6P55285 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CDH6P55285 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH6P55285 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH6P55285 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CDH6P55285 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 TSPY14P-201ENST00000303979 915 ntBASIC19.24■□□□□ 0.67
CDH6P55285 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
CDH6P55285 AP000593.1-201ENST00000393668 712 ntBASIC19.24■□□□□ 0.67
CDH6P55285 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.24■□□□□ 0.67
CDH6P55285 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CDH6P55285 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 CR769767.2-201ENST00000622735 460 ntBASIC19.24■□□□□ 0.67
CDH6P55285 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 KRT8P50-201ENST00000562022 1438 ntBASIC19.24■□□□□ 0.67
CDH6P55285 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.24■□□□□ 0.67
CDH6P55285 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CDH6P55285 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.24■□□□□ 0.67
CDH6P55285 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CDH6P55285 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms