Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
LHX1P48742 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
LHX1P48742 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LHX1P48742 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
LHX1P48742 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.73
LHX1P48742 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
LHX1P48742 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.58■□□□□ 0.72
LHX1P48742 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX1P48742 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.58■□□□□ 0.72
LHX1P48742 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
LHX1P48742 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.58■□□□□ 0.72
LHX1P48742 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
LHX1P48742 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX1P48742 AC011498.5-201ENST00000592027 486 ntBASIC19.58■□□□□ 0.72
LHX1P48742 AC024563.2-201ENST00000603282 481 ntBASIC19.58■□□□□ 0.72
LHX1P48742 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
LHX1P48742 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.58■□□□□ 0.72
LHX1P48742 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
LHX1P48742 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LHX1P48742 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 CROCCP3-202ENST00000420820 1947 ntBASIC19.57■□□□□ 0.72
LHX1P48742 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX1P48742 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LHX1P48742 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 KRT18P48-201ENST00000434763 852 ntBASIC19.57■□□□□ 0.72
LHX1P48742 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.57■□□□□ 0.72
LHX1P48742 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.57■□□□□ 0.72
LHX1P48742 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LHX1P48742 AC069148.1-201ENST00000608741 768 ntBASIC19.57■□□□□ 0.72
LHX1P48742 AP000974.1-201ENST00000623909 2387 ntBASIC19.57■□□□□ 0.72
LHX1P48742 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.57■□□□□ 0.72
LHX1P48742 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LHX1P48742 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LHX1P48742 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.56■□□□□ 0.72
LHX1P48742 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.56■□□□□ 0.72
LHX1P48742 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.56■□□□□ 0.72
LHX1P48742 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 KRT89P-201ENST00000620027 1478 ntBASIC19.56■□□□□ 0.72
LHX1P48742 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.56■□□□□ 0.72
LHX1P48742 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.56■□□□□ 0.72
LHX1P48742 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.56■□□□□ 0.72
LHX1P48742 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 AC018445.3-201ENST00000624177 1945 ntBASIC19.56■□□□□ 0.72
LHX1P48742 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.56■□□□□ 0.72
LHX1P48742 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LHX1P48742 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LHX1P48742 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.55■□□□□ 0.72
LHX1P48742 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.55■□□□□ 0.72
LHX1P48742 AP003733.1-201ENST00000491725 852 ntBASIC19.55■□□□□ 0.72
LHX1P48742 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.55■□□□□ 0.72
LHX1P48742 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.55■□□□□ 0.72
LHX1P48742 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.55■□□□□ 0.72
LHX1P48742 AC008687.5-201ENST00000593746 558 ntBASIC19.55■□□□□ 0.72
LHX1P48742 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LHX1P48742 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.55■□□□□ 0.72
LHX1P48742 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms