Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 MIR662-201ENST00000384847 95 ntBASIC17.57■□□□□ 0.4
RORAP35398 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 KRT18P48-201ENST00000434763 852 ntBASIC17.57■□□□□ 0.4
RORAP35398 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 HCG11-201ENST00000411553 5696 ntBASIC17.57■□□□□ 0.4
RORAP35398 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RORAP35398 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 AC006333.2-201ENST00000607957 2099 ntBASIC17.57■□□□□ 0.4
RORAP35398 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.57■□□□□ 0.4
RORAP35398 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.57■□□□□ 0.4
RORAP35398 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.57■□□□□ 0.4
RORAP35398 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RORAP35398 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.56■□□□□ 0.4
RORAP35398 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
RORAP35398 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.56■□□□□ 0.4
RORAP35398 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.56■□□□□ 0.4
RORAP35398 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 MIR3180-4-201ENST00000582223 153 ntBASIC17.56■□□□□ 0.4
RORAP35398 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RORAP35398 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.56■□□□□ 0.4
RORAP35398 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RORAP35398 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
RORAP35398 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RORAP35398 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.55■□□□□ 0.4
RORAP35398 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.55■□□□□ 0.4
RORAP35398 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.55■□□□□ 0.4
RORAP35398 AL049812.1-201ENST00000432563 2267 ntBASIC17.55■□□□□ 0.4
RORAP35398 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RORAP35398 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 DUSP5P1-201ENST00000441325 1139 ntBASIC17.55■□□□□ 0.4
RORAP35398 KRT126P-201ENST00000549467 1181 ntBASIC17.55■□□□□ 0.4
RORAP35398 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.55■□□□□ 0.4
RORAP35398 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.55■□□□□ 0.4
RORAP35398 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.55■□□□□ 0.4
RORAP35398 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RORAP35398 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.55■□□□□ 0.4
RORAP35398 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RORAP35398 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms