Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VTNP04004 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VTNP04004 AL499627.1-201ENST00000569373 2188 ntBASIC20.28■□□□□ 0.84
VTNP04004 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.28■□□□□ 0.84
VTNP04004 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VTNP04004 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.27■□□□□ 0.84
VTNP04004 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.27■□□□□ 0.84
VTNP04004 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
VTNP04004 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.27■□□□□ 0.84
VTNP04004 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.27■□□□□ 0.84
VTNP04004 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VTNP04004 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VTNP04004 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.26■□□□□ 0.83
VTNP04004 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 DRAXINP1-201ENST00000437611 948 ntBASIC20.26■□□□□ 0.83
VTNP04004 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.26■□□□□ 0.83
VTNP04004 AP000867.3-201ENST00000524675 377 ntBASIC20.26■□□□□ 0.83
VTNP04004 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.26■□□□□ 0.83
VTNP04004 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.26■□□□□ 0.83
VTNP04004 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VTNP04004 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
VTNP04004 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VTNP04004 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
VTNP04004 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.25■□□□□ 0.83
VTNP04004 TOB2P1-201ENST00000469761 992 ntBASIC20.25■□□□□ 0.83
VTNP04004 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.25■□□□□ 0.83
VTNP04004 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.25■□□□□ 0.83
VTNP04004 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VTNP04004 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 IGHV3-41-201ENST00000613121 348 ntBASIC20.25■□□□□ 0.83
VTNP04004 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.25■□□□□ 0.83
VTNP04004 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VTNP04004 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.25■□□□□ 0.83
VTNP04004 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VTNP04004 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.25■□□□□ 0.83
VTNP04004 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VTNP04004 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.24■□□□□ 0.83
VTNP04004 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.24■□□□□ 0.83
VTNP04004 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.24■□□□□ 0.83
VTNP04004 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.24■□□□□ 0.83
VTNP04004 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
VTNP04004 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
VTNP04004 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VTNP04004 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VTNP04004 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.23■□□□□ 0.83
VTNP04004 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VTNP04004 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.23■□□□□ 0.83
VTNP04004 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VTNP04004 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms