Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AP006294.2-201ENST00000641667 209 ntBASIC17.93■□□□□ 0.46
CLDN9O95484 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
CLDN9O95484 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN9O95484 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN9O95484 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN9O95484 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
CLDN9O95484 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN9O95484 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.93■□□□□ 0.46
CLDN9O95484 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN9O95484 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 SLC25A1P2-201ENST00000430693 912 ntBASIC17.92■□□□□ 0.46
CLDN9O95484 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN9O95484 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CLDN9O95484 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.92■□□□□ 0.46
CLDN9O95484 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN9O95484 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 NOC2LP1-202ENST00000452600 2235 ntBASIC17.91■□□□□ 0.46
CLDN9O95484 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 TSPY17P-201ENST00000450329 467 ntBASIC17.91■□□□□ 0.46
CLDN9O95484 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 AC135776.1-201ENST00000319817 2481 ntBASIC17.91■□□□□ 0.46
CLDN9O95484 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN9O95484 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN9O95484 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN9O95484 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CLDN9O95484 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 MIR4674-201ENST00000582457 87 ntBASIC17.9■□□□□ 0.46
CLDN9O95484 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 AL023803.3-201ENST00000615559 522 ntBASIC17.9■□□□□ 0.46
CLDN9O95484 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.9■□□□□ 0.46
CLDN9O95484 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
CLDN9O95484 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CLDN9O95484 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms