Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.74■□□□□ 0.43
SEMA3DO95025 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.74■□□□□ 0.43
SEMA3DO95025 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.74■□□□□ 0.43
SEMA3DO95025 EGLN1P1-201ENST00000531623 762 ntBASIC17.74■□□□□ 0.43
SEMA3DO95025 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 WWOX-216ENST00000569818 525 ntBASIC17.74■□□□□ 0.43
SEMA3DO95025 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SEMA3DO95025 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.74■□□□□ 0.43
SEMA3DO95025 MYLKP1-201ENST00000509077 1580 ntBASIC17.74■□□□□ 0.43
SEMA3DO95025 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
SEMA3DO95025 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SEMA3DO95025 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SEMA3DO95025 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.73■□□□□ 0.43
SEMA3DO95025 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.73■□□□□ 0.43
SEMA3DO95025 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
SEMA3DO95025 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SEMA3DO95025 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.73■□□□□ 0.43
SEMA3DO95025 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.73■□□□□ 0.43
SEMA3DO95025 AC093827.2-201ENST00000512654 315 ntBASIC17.73■□□□□ 0.43
SEMA3DO95025 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.73■□□□□ 0.43
SEMA3DO95025 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.73■□□□□ 0.43
SEMA3DO95025 FZD10-202ENST00000539839 3282 ntBASIC17.73■□□□□ 0.43
SEMA3DO95025 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SEMA3DO95025 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SEMA3DO95025 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SEMA3DO95025 KRT8P7-201ENST00000533003 1432 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.72■□□□□ 0.43
SEMA3DO95025 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SEMA3DO95025 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SEMA3DO95025 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 AC036111.1-201ENST00000533973 1582 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 AL162741.1-201ENST00000565563 1558 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 AC007663.1-201ENST00000438948 1240 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.72■□□□□ 0.43
SEMA3DO95025 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SEMA3DO95025 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.72■□□□□ 0.43
SEMA3DO95025 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.72■□□□□ 0.43
SEMA3DO95025 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 HOXB1-202ENST00000577092 1414 ntBASIC17.72■□□□□ 0.43
SEMA3DO95025 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SEMA3DO95025 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
SEMA3DO95025 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SEMA3DO95025 AC128688.1-201ENST00000487626 519 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms