Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 WSB1-212ENST00000583096 834 ntTSL 37.56□□□□□ -1.23e-6■□□□□ 9.1
SMNDC1O75940 MYL6-221ENST00000552297 454 ntTSL 35.83□□□□□ -1.483e-6■□□□□ 9.1
SMNDC1O75940 WSB1-216ENST00000584114 479 ntTSL 33.56□□□□□ -1.843e-6■□□□□ 9.1
SMNDC1O75940 RACK1-207ENST00000503170 461 ntTSL 415.01□□□□□ -0.012e-83■□□□□ 9.1
SMNDC1O75940 RACK1-232ENST00000514318 581 ntTSL 314.59□□□□□ -0.072e-83■□□□□ 9.1
SMNDC1O75940 SNORD95-201ENST00000579879 68 ntBASIC5.18□□□□□ -1.582e-83■□□□□ 9.1
SMNDC1O75940 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.743e-8■□□□□ 9.1
SMNDC1O75940 C2orf42-212ENST00000470096 579 ntTSL 414.77□□□□□ -0.053e-8■□□□□ 9.1
SMNDC1O75940 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.57□□□□□ -0.083e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-207ENST00000572346 567 ntTSL 413.32□□□□□ -0.283e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC12.92□□□□□ -0.343e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-218ENST00000574964 572 ntTSL 412.92□□□□□ -0.343e-8■□□□□ 9.1
SMNDC1O75940 TIA1-210ENST00000474809 915 ntTSL 511.71□□□□□ -0.533e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC11.47□□□□□ -0.573e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-213ENST00000573519 654 ntTSL 1 (best)11.46□□□□□ -0.573e-8■□□□□ 9.1
SMNDC1O75940 TIA1-203ENST00000415783 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.643e-8■□□□□ 9.1
SMNDC1O75940 TIA1-205ENST00000433529 4647 ntTSL 2 BASIC10.95□□□□□ -0.663e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-206ENST00000571714 676 ntTSL 510.06□□□□□ -0.83e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-210ENST00000572824 559 ntTSL 49.67□□□□□ -0.863e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-219ENST00000576713 571 ntTSL 59.67□□□□□ -0.863e-8■□□□□ 9.1
SMNDC1O75940 TIA1-207ENST00000454815 911 ntTSL 58.39□□□□□ -1.073e-8■□□□□ 9.1
SMNDC1O75940 TIA1-204ENST00000416149 821 ntTSL 1 (best) BASIC8.31□□□□□ -1.083e-8■□□□□ 9.1
SMNDC1O75940 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC8.2□□□□□ -1.13e-8■□□□□ 9.1
SMNDC1O75940 NPLOC4-211ENST00000573212 564 ntTSL 47.83□□□□□ -1.163e-8■□□□□ 9.1
SMNDC1O75940 TIA1-211ENST00000477044 904 ntTSL 57.44□□□□□ -1.223e-8■□□□□ 9.1
SMNDC1O75940 TIA1-212ENST00000477415 510 ntTSL 27.13□□□□□ -1.273e-8■□□□□ 9.1
SMNDC1O75940 TIA1-218ENST00000496096 511 ntTSL 36.29□□□□□ -1.43e-8■□□□□ 9.1
SMNDC1O75940 TIA1-202ENST00000361692 543 ntTSL 54.61□□□□□ -1.673e-8■□□□□ 9.1
SMNDC1O75940 SNORA64-201ENST00000384674 134 ntBASIC1.94□□□□□ -2.11e-323■□□□□ 9
SMNDC1O75940 COL27A1-202ENST00000451716 2865 ntTSL 1 (best)12.44□□□□□ -0.421e-6■□□□□ 9
SMNDC1O75940 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC22.65■■□□□ 1.224e-10■□□□□ 9
SMNDC1O75940 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.232e-7■□□□□ 9
SMNDC1O75940 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC13.91□□□□□ -0.182e-7■□□□□ 9
SMNDC1O75940 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.282e-7■□□□□ 9
SMNDC1O75940 HECTD1-211ENST00000555915 775 ntTSL 57.86□□□□□ -1.152e-7■□□□□ 9
SMNDC1O75940 HECTD1-204ENST00000553957 4395 ntTSL 24.93□□□□□ -1.622e-7■□□□□ 9
SMNDC1O75940 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.053e-7■□□□□ 9
SMNDC1O75940 HNRNPM-214ENST00000600806 2373 ntTSL 519.27■□□□□ 0.673e-7■□□□□ 9
SMNDC1O75940 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.593e-7■□□□□ 9
SMNDC1O75940 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.553e-7■□□□□ 9
SMNDC1O75940 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.14■□□□□ 0.495e-8■□□□□ 9
SMNDC1O75940 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.324e-11■□□□□ 9
SMNDC1O75940 ATP1B3-204ENST00000466678 1708 ntTSL 312.78□□□□□ -0.364e-11■□□□□ 9
SMNDC1O75940 ADD1-209ENST00000503169 2394 ntTSL 29.01□□□□□ -0.974e-11■□□□□ 9
SMNDC1O75940 ATP1B3-207ENST00000484727 657 ntTSL 28□□□□□ -1.134e-11■□□□□ 9
SMNDC1O75940 ATP1B3-203ENST00000465172 1951 ntTSL 27.85□□□□□ -1.154e-11■□□□□ 9
SMNDC1O75940 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC7.68□□□□□ -1.184e-11■□□□□ 9
SMNDC1O75940 ATP1B3-208ENST00000486782 229 ntTSL 27.2□□□□□ -1.264e-11■□□□□ 9
SMNDC1O75940 ATP1B3-209ENST00000487199 421 ntTSL 34.81□□□□□ -1.644e-11■□□□□ 9
SMNDC1O75940 SNORA4-201ENST00000584302 138 ntBASIC2.17□□□□□ -2.061e-20■□□□□ 9
SMNDC1O75940 RTKN-205ENST00000464094 1266 ntTSL 1 (best)19.96■□□□□ 0.794e-10■□□□□ 9
SMNDC1O75940 RTKN-209ENST00000484453 820 ntTSL 1 (best)19.89■□□□□ 0.774e-10■□□□□ 9
SMNDC1O75940 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.51■□□□□ 0.714e-10■□□□□ 9
SMNDC1O75940 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.594e-10■□□□□ 9
SMNDC1O75940 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.14■□□□□ 0.494e-10■□□□□ 9
SMNDC1O75940 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-10■□□□□ 9
SMNDC1O75940 RTKN-208ENST00000479256 564 ntTSL 514.29□□□□□ -0.124e-10■□□□□ 9
SMNDC1O75940 RTKN-207ENST00000472518 1105 ntTSL 1 (best)12.61□□□□□ -0.394e-10■□□□□ 9
SMNDC1O75940 RTKN-204ENST00000460968 842 ntTSL 212.25□□□□□ -0.454e-10■□□□□ 9
SMNDC1O75940 DPP4-204ENST00000434918 2674 ntTSL 1 (best)12.07□□□□□ -0.484e-10■□□□□ 9
SMNDC1O75940 DPP4-201ENST00000360534 3904 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.514e-10■□□□□ 9
SMNDC1O75940 CFI-207ENST00000618244 1345 ntTSL 5 BASIC8.14□□□□□ -1.114e-10■□□□□ 9
SMNDC1O75940 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC7.36□□□□□ -1.234e-10■□□□□ 9
SMNDC1O75940 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.274e-10■□□□□ 9
SMNDC1O75940 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.44e-10■□□□□ 9
SMNDC1O75940 CFI-203ENST00000504853 2368 ntTSL 26.32□□□□□ -1.44e-10■□□□□ 9
SMNDC1O75940 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.695e-6■□□□□ 9
SMNDC1O75940 SLC4A2-218ENST00000494125 782 ntTSL 221.83■■□□□ 1.099e-8■□□□□ 9
SMNDC1O75940 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.859e-8■□□□□ 9
SMNDC1O75940 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.229e-8■□□□□ 9
SMNDC1O75940 COPS6-206ENST00000468499 745 ntTSL 315.99■□□□□ 0.155e-6■□□□□ 9
SMNDC1O75940 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.159e-8■□□□□ 9
SMNDC1O75940 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.099e-8■□□□□ 9
SMNDC1O75940 SLC4A2-205ENST00000463414 793 ntTSL 315.5■□□□□ 0.079e-8■□□□□ 9
SMNDC1O75940 SLC3A2-213ENST00000539458 565 ntTSL 515.44■□□□□ 0.067e-21■□□□□ 9
SMNDC1O75940 SLC4A2-213ENST00000483786 571 ntTSL 415.17■□□□□ 0.029e-8■□□□□ 9
SMNDC1O75940 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.099e-8■□□□□ 9
SMNDC1O75940 MAN2C1-218ENST00000563794 818 ntTSL 314.12□□□□□ -0.159e-8■□□□□ 9
SMNDC1O75940 SLC4A2-216ENST00000490898 702 ntTSL 314.01□□□□□ -0.179e-8■□□□□ 9
SMNDC1O75940 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.185e-6■□□□□ 9
SMNDC1O75940 SLC3A2-211ENST00000538084 741 ntTSL 313.37□□□□□ -0.277e-21■□□□□ 9
SMNDC1O75940 SLC4A2-204ENST00000461735 4387 ntTSL 1 (best) BASIC13.23□□□□□ -0.299e-8■□□□□ 9
SMNDC1O75940 ARID1A-210ENST00000636072 1128 ntTSL 513.14□□□□□ -0.319e-8■□□□□ 9
SMNDC1O75940 SLC4A2-212ENST00000482950 500 ntTSL 412.82□□□□□ -0.369e-8■□□□□ 9
SMNDC1O75940 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.429e-8■□□□□ 9
SMNDC1O75940 ARID1A-214ENST00000636794 1068 ntTSL 511.11□□□□□ -0.639e-8■□□□□ 9
SMNDC1O75940 DTL-206ENST00000542077 4471 ntTSL 2 BASIC9.56□□□□□ -0.889e-8■□□□□ 9
SMNDC1O75940 COPS6-208ENST00000474823 752 ntTSL 29.4□□□□□ -0.95e-6■□□□□ 9
SMNDC1O75940 SLC3A2-210ENST00000537839 584 ntTSL 59.39□□□□□ -0.917e-21■□□□□ 9
SMNDC1O75940 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC9.18□□□□□ -0.949e-8■□□□□ 9
SMNDC1O75940 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.07□□□□□ -1.129e-8■□□□□ 9
SMNDC1O75940 COPS6-204ENST00000426712 716 ntTSL 37.97□□□□□ -1.135e-6■□□□□ 9
SMNDC1O75940 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.22□□□□□ -1.259e-8■□□□□ 9
SMNDC1O75940 SLC3A2-218ENST00000541649 515 ntTSL 36.59□□□□□ -1.357e-21■□□□□ 9
SMNDC1O75940 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.369e-8■□□□□ 9
SMNDC1O75940 ATP11B-207ENST00000490303 2290 ntTSL 26.26□□□□□ -1.419e-8■□□□□ 9
SMNDC1O75940 DTL-203ENST00000475419 3662 ntTSL 26.07□□□□□ -1.449e-8■□□□□ 9
SMNDC1O75940 DTL-204ENST00000489149 815 ntTSL 25.48□□□□□ -1.539e-8■□□□□ 9
SMNDC1O75940 COPS6-209ENST00000483891 734 ntTSL 35.37□□□□□ -1.555e-6■□□□□ 9
SMNDC1O75940 ATP11B-210ENST00000498086 3259 ntTSL 53.43□□□□□ -1.869e-8■□□□□ 9
Retrieved 100 of 11,362 protein–RNA pairs in 228.9 ms