Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
RNF40O75150 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.96■□□□□ 0.79
RNF40O75150 WWOX-216ENST00000569818 525 ntBASIC19.96■□□□□ 0.79
RNF40O75150 AC141586.3-201ENST00000562166 1838 ntBASIC19.96■□□□□ 0.79
RNF40O75150 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.96■□□□□ 0.79
RNF40O75150 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 TEX21P-204ENST00000641479 1693 ntBASIC19.96■□□□□ 0.79
RNF40O75150 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.96■□□□□ 0.79
RNF40O75150 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.96■□□□□ 0.79
RNF40O75150 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
RNF40O75150 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.96■□□□□ 0.79
RNF40O75150 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
RNF40O75150 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.96■□□□□ 0.79
RNF40O75150 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
RNF40O75150 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
RNF40O75150 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 AC099398.1-201ENST00000567919 2776 ntBASIC19.95■□□□□ 0.78
RNF40O75150 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
RNF40O75150 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.95■□□□□ 0.78
RNF40O75150 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.95■□□□□ 0.78
RNF40O75150 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
RNF40O75150 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
RNF40O75150 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.95■□□□□ 0.78
RNF40O75150 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
RNF40O75150 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
RNF40O75150 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
RNF40O75150 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RNF40O75150 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.94■□□□□ 0.78
RNF40O75150 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.94■□□□□ 0.78
RNF40O75150 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.94■□□□□ 0.78
RNF40O75150 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.94■□□□□ 0.78
RNF40O75150 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.94■□□□□ 0.78
RNF40O75150 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
RNF40O75150 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
RNF40O75150 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 AC128688.1-201ENST00000487626 519 ntBASIC19.94■□□□□ 0.78
RNF40O75150 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.94■□□□□ 0.78
RNF40O75150 SLC25A1P4-201ENST00000567977 778 ntBASIC19.94■□□□□ 0.78
RNF40O75150 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.94■□□□□ 0.78
RNF40O75150 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
RNF40O75150 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RNF40O75150 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.93■□□□□ 0.78
RNF40O75150 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.93■□□□□ 0.78
RNF40O75150 INGX-201ENST00000359239 846 ntBASIC19.93■□□□□ 0.78
RNF40O75150 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
RNF40O75150 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.93■□□□□ 0.78
RNF40O75150 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.93■□□□□ 0.78
RNF40O75150 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
RNF40O75150 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.93■□□□□ 0.78
RNF40O75150 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
RNF40O75150 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
RNF40O75150 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RNF40O75150 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
RNF40O75150 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms