Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
MSH5O43196 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH5O43196 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH5O43196 PTBP1P-201ENST00000554374 1601 ntBASIC25.13■■□□□ 1.61
MSH5O43196 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH5O43196 MFAP1P1-201ENST00000442257 1255 ntBASIC25.13■■□□□ 1.61
MSH5O43196 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH5O43196 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH5O43196 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH5O43196 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH5O43196 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
MSH5O43196 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC25.13■■□□□ 1.61
MSH5O43196 AP000692.2-201ENST00000608391 879 ntBASIC25.13■■□□□ 1.61
MSH5O43196 AC130371.2-201ENST00000619443 611 ntBASIC25.13■■□□□ 1.61
MSH5O43196 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC25.13■■□□□ 1.61
MSH5O43196 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
MSH5O43196 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
MSH5O43196 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC25.13■■□□□ 1.61
MSH5O43196 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
MSH5O43196 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.12■■□□□ 1.61
MSH5O43196 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC25.12■■□□□ 1.61
MSH5O43196 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 PTGES2-AS1-201ENST00000443493 2100 ntBASIC25.12■■□□□ 1.61
MSH5O43196 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 ANKRD20A18P-201ENST00000359341 492 ntBASIC25.12■■□□□ 1.61
MSH5O43196 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC25.12■■□□□ 1.61
MSH5O43196 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 AL691432.3-201ENST00000621860 400 ntBASIC25.12■■□□□ 1.61
MSH5O43196 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC25.12■■□□□ 1.61
MSH5O43196 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
MSH5O43196 SERPINA9-201ENST00000298845 1423 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
MSH5O43196 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH5O43196 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 HCG24-202ENST00000414398 717 ntTSL 3 BASIC25.11■■□□□ 1.61
MSH5O43196 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 RFC3P1-201ENST00000454568 682 ntBASIC25.11■■□□□ 1.61
MSH5O43196 AL671277.2-201ENST00000458060 996 ntBASIC25.11■■□□□ 1.61
MSH5O43196 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH5O43196 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC25.11■■□□□ 1.61
MSH5O43196 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH5O43196 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC25.11■■□□□ 1.61
MSH5O43196 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC25.11■■□□□ 1.61
MSH5O43196 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
MSH5O43196 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC25.1■■□□□ 1.61
MSH5O43196 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 AC083899.2-201ENST00000423285 1376 ntBASIC25.1■■□□□ 1.61
MSH5O43196 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
MSH5O43196 CEP41-203ENST00000343969 1087 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 HIBCH-207ENST00000410045 854 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC25.1■■□□□ 1.61
MSH5O43196 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
MSH5O43196 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH5O43196 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 NUDT4-205ENST00000548662 765 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC25.1■■□□□ 1.61
MSH5O43196 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC25.1■■□□□ 1.61
MSH5O43196 AC140113.3-201ENST00000605663 199 ntBASIC25.1■■□□□ 1.61
MSH5O43196 AC093726.1-201ENST00000608064 963 ntBASIC25.1■■□□□ 1.61
MSH5O43196 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC25.1■■□□□ 1.61
MSH5O43196 AC012313.1-201ENST00000593393 3059 ntBASIC25.1■■□□□ 1.61
MSH5O43196 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC25.1■■□□□ 1.61
MSH5O43196 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
MSH5O43196 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC25.1■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms