Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 KRT18P41-201ENST00000518924 1277 ntBASIC18.05■□□□□ 0.48
HDAC3O15379 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.05■□□□□ 0.48
HDAC3O15379 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.05■□□□□ 0.48
HDAC3O15379 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.05■□□□□ 0.48
HDAC3O15379 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.05■□□□□ 0.48
HDAC3O15379 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDAC3O15379 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.04■□□□□ 0.48
HDAC3O15379 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC3O15379 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC3O15379 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.04■□□□□ 0.48
HDAC3O15379 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.04■□□□□ 0.48
HDAC3O15379 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.04■□□□□ 0.48
HDAC3O15379 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
HDAC3O15379 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 AC008403.3-201ENST00000598924 454 ntBASIC18.04■□□□□ 0.48
HDAC3O15379 AC131212.4-201ENST00000623606 975 ntBASIC18.04■□□□□ 0.48
HDAC3O15379 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HDAC3O15379 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
HDAC3O15379 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HDAC3O15379 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
HDAC3O15379 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.03■□□□□ 0.48
HDAC3O15379 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HDAC3O15379 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.03■□□□□ 0.48
HDAC3O15379 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HDAC3O15379 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC3O15379 KRT16P5-201ENST00000455284 522 ntBASIC18.03■□□□□ 0.48
HDAC3O15379 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HDAC3O15379 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.03■□□□□ 0.48
HDAC3O15379 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HDAC3O15379 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
HDAC3O15379 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HDAC3O15379 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.02■□□□□ 0.48
HDAC3O15379 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
HDAC3O15379 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.02■□□□□ 0.48
HDAC3O15379 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
HDAC3O15379 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.02■□□□□ 0.48
HDAC3O15379 AC139713.2-201ENST00000641328 2723 ntBASIC18.02■□□□□ 0.48
HDAC3O15379 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HDAC3O15379 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.02■□□□□ 0.47
HDAC3O15379 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
HDAC3O15379 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HDAC3O15379 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
HDAC3O15379 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
HDAC3O15379 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms