Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 FAM201B-201ENST00000458407 597 ntBASIC15.78■□□□□ 0.12
SDCBPO00560 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.78■□□□□ 0.12
SDCBPO00560 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.78■□□□□ 0.12
SDCBPO00560 AC008764.6-201ENST00000595909 2069 ntBASIC15.78■□□□□ 0.12
SDCBPO00560 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC15.78■□□□□ 0.12
SDCBPO00560 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SDCBPO00560 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 AL162741.1-201ENST00000565563 1558 ntBASIC15.78■□□□□ 0.12
SDCBPO00560 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SDCBPO00560 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SDCBPO00560 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.77■□□□□ 0.12
SDCBPO00560 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.77■□□□□ 0.12
SDCBPO00560 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SDCBPO00560 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.77■□□□□ 0.12
SDCBPO00560 TSPY23P-201ENST00000440136 739 ntBASIC15.77■□□□□ 0.12
SDCBPO00560 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.77■□□□□ 0.12
SDCBPO00560 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.77■□□□□ 0.12
SDCBPO00560 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.77■□□□□ 0.12
SDCBPO00560 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC15.77■□□□□ 0.12
SDCBPO00560 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.77■□□□□ 0.12
SDCBPO00560 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.77■□□□□ 0.12
SDCBPO00560 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SDCBPO00560 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SDCBPO00560 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
SDCBPO00560 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.77■□□□□ 0.11
SDCBPO00560 EML3-216ENST00000529309 2909 ntTSL 2 BASIC15.77■□□□□ 0.11
SDCBPO00560 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
SDCBPO00560 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.77■□□□□ 0.11
SDCBPO00560 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
SDCBPO00560 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SDCBPO00560 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
SDCBPO00560 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.76■□□□□ 0.11
SDCBPO00560 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.76■□□□□ 0.11
SDCBPO00560 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 DENND3-207ENST00000518347 850 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.76■□□□□ 0.11
SDCBPO00560 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SDCBPO00560 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SDCBPO00560 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
SDCBPO00560 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
SDCBPO00560 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.76■□□□□ 0.11
SDCBPO00560 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.76■□□□□ 0.11
SDCBPO00560 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SDCBPO00560 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SDCBPO00560 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SDCBPO00560 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC15.75■□□□□ 0.11
SDCBPO00560 AC020916.1-201ENST00000587762 1774 ntBASIC15.75■□□□□ 0.11
SDCBPO00560 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SDCBPO00560 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SDCBPO00560 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SDCBPO00560 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
SDCBPO00560 AP002982.1-201ENST00000492365 877 ntBASIC15.75■□□□□ 0.11
SDCBPO00560 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms