Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.58■□□□□ 0.4
UPK1AO00322 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.58■□□□□ 0.4
UPK1AO00322 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
UPK1AO00322 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.58■□□□□ 0.4
UPK1AO00322 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.58■□□□□ 0.4
UPK1AO00322 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
UPK1AO00322 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
UPK1AO00322 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.58■□□□□ 0.4
UPK1AO00322 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.58■□□□□ 0.4
UPK1AO00322 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.57■□□□□ 0.4
UPK1AO00322 MTMR9LP-203ENST00000426597 1545 ntBASIC17.57■□□□□ 0.4
UPK1AO00322 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.57■□□□□ 0.4
UPK1AO00322 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.57■□□□□ 0.4
UPK1AO00322 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 CRYGFP-201ENST00000418459 633 ntBASIC17.57■□□□□ 0.4
UPK1AO00322 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 RBM17P1-201ENST00000453646 1190 ntBASIC17.57■□□□□ 0.4
UPK1AO00322 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.57■□□□□ 0.4
UPK1AO00322 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.57■□□□□ 0.4
UPK1AO00322 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.57■□□□□ 0.4
UPK1AO00322 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.57■□□□□ 0.4
UPK1AO00322 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.57■□□□□ 0.4
UPK1AO00322 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
UPK1AO00322 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
UPK1AO00322 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
UPK1AO00322 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
UPK1AO00322 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.57■□□□□ 0.4
UPK1AO00322 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.57■□□□□ 0.4
UPK1AO00322 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.56■□□□□ 0.4
UPK1AO00322 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
UPK1AO00322 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 UNC93B2-201ENST00000285383 730 ntBASIC17.56■□□□□ 0.4
UPK1AO00322 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.56■□□□□ 0.4
UPK1AO00322 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
UPK1AO00322 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.56■□□□□ 0.4
UPK1AO00322 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.56■□□□□ 0.4
UPK1AO00322 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.56■□□□□ 0.4
UPK1AO00322 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.56■□□□□ 0.4
UPK1AO00322 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
UPK1AO00322 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.56■□□□□ 0.4
UPK1AO00322 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
UPK1AO00322 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
UPK1AO00322 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
UPK1AO00322 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.55■□□□□ 0.4
UPK1AO00322 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms