Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC112907.2-201ENST00000448639 330 ntBASIC18.92■□□□□ 0.62
CBX4O00257 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.92■□□□□ 0.62
CBX4O00257 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.92■□□□□ 0.62
CBX4O00257 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
CBX4O00257 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 AL157888.1-201ENST00000631930 593 ntBASIC18.92■□□□□ 0.62
CBX4O00257 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
CBX4O00257 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
CBX4O00257 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CBX4O00257 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CBX4O00257 KRT8P50-201ENST00000562022 1438 ntBASIC18.91■□□□□ 0.62
CBX4O00257 ANO7L1-203ENST00000602586 1720 ntBASIC18.91■□□□□ 0.62
CBX4O00257 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CBX4O00257 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
CBX4O00257 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 MIR3917-201ENST00000580971 93 ntBASIC18.91■□□□□ 0.62
CBX4O00257 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.91■□□□□ 0.62
CBX4O00257 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.91■□□□□ 0.62
CBX4O00257 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CBX4O00257 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CBX4O00257 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.9■□□□□ 0.62
CBX4O00257 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CBX4O00257 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 AL671277.2-201ENST00000458060 996 ntBASIC18.9■□□□□ 0.62
CBX4O00257 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.9■□□□□ 0.62
CBX4O00257 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.9■□□□□ 0.62
CBX4O00257 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.9■□□□□ 0.62
CBX4O00257 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.9■□□□□ 0.62
CBX4O00257 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CBX4O00257 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 CROCCP3-202ENST00000420820 1947 ntBASIC18.9■□□□□ 0.62
CBX4O00257 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 AC099343.3-201ENST00000605834 2503 ntBASIC18.9■□□□□ 0.62
CBX4O00257 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CBX4O00257 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CBX4O00257 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.89■□□□□ 0.62
CBX4O00257 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.89■□□□□ 0.61
CBX4O00257 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
CBX4O00257 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CBX4O00257 BX323043.1-201ENST00000641006 1765 ntBASIC18.89■□□□□ 0.61
CBX4O00257 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.89■□□□□ 0.61
CBX4O00257 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.89■□□□□ 0.61
CBX4O00257 KRT18P41-201ENST00000518924 1277 ntBASIC18.89■□□□□ 0.61
CBX4O00257 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.89■□□□□ 0.61
CBX4O00257 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.89■□□□□ 0.61
CBX4O00257 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CBX4O00257 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.89■□□□□ 0.61
CBX4O00257 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CBX4O00257 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CBX4O00257 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms