Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 LSM12P1-201ENST00000411836 588 ntBASIC13.56□□□□□ -0.24
SMKR1H3BMG3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 AC108860.2-201ENST00000562760 2183 ntBASIC13.56□□□□□ -0.24
SMKR1H3BMG3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC13.56□□□□□ -0.24
SMKR1H3BMG3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 RPS2P52-201ENST00000469610 820 ntBASIC13.55□□□□□ -0.24
SMKR1H3BMG3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 AC006557.6-201ENST00000623071 864 ntBASIC13.55□□□□□ -0.24
SMKR1H3BMG3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
SMKR1H3BMG3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 RER1-204ENST00000378518 522 ntTSL 3 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 APTR-203ENST00000430801 583 ntTSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 MTMR9LP-203ENST00000426597 1545 ntBASIC13.54□□□□□ -0.24
SMKR1H3BMG3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SMKR1H3BMG3 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SMKR1H3BMG3 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SMKR1H3BMG3 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SMKR1H3BMG3 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.53□□□□□ -0.24
SMKR1H3BMG3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SMKR1H3BMG3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SMKR1H3BMG3 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms