Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AP000997.3-201ENST00000623333 2250 ntBASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
TCRBV7S3A2A0A539 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 KRT8P50-201ENST00000562022 1438 ntBASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 AL135905.2-201ENST00000584934 1404 ntBASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ABHD17AP1-201ENST00000358206 933 ntBASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 MCCD1P1-208ENST00000445732 328 ntBASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 AIRN-201ENST00000601203 4374 ntBASIC18.84■□□□□ 0.61
TCRBV7S3A2A0A539 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.83■□□□□ 0.61
TCRBV7S3A2A0A539 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 DGCR10-201ENST00000609839 495 ntBASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.83■□□□□ 0.6
TCRBV7S3A2A0A539 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 AC138028.4-201ENST00000564984 1845 ntBASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TCRBV7S3A2A0A539 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TCRBV7S3A2A0A539 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms