Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
NKX3-1Q99801 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
NKX3-1Q99801 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC128676.1-201ENST00000454392 318 ntBASIC16.19■□□□□ 0.18
NKX3-1Q99801 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 ADM-205ENST00000528544 586 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 AL023875.1-201ENST00000640777 796 ntBASIC16.19■□□□□ 0.18
NKX3-1Q99801 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
NKX3-1Q99801 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
NKX3-1Q99801 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 PRORSD1P-201ENST00000295112 541 ntBASIC16.18■□□□□ 0.18
NKX3-1Q99801 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 AL158047.1-201ENST00000445918 881 ntBASIC16.18■□□□□ 0.18
NKX3-1Q99801 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 Z85996.1-201ENST00000494644 937 ntBASIC16.18■□□□□ 0.18
NKX3-1Q99801 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 AC069544.1-201ENST00000609399 999 ntBASIC16.18■□□□□ 0.18
NKX3-1Q99801 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
NKX3-1Q99801 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NKX3-1Q99801 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms