Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
KRT40Q6A162 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC21.48■■□□□ 1.03
KRT40Q6A162 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.48■■□□□ 1.03
KRT40Q6A162 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.48■■□□□ 1.03
KRT40Q6A162 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.48■■□□□ 1.03
KRT40Q6A162 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
KRT40Q6A162 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
KRT40Q6A162 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
KRT40Q6A162 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
KRT40Q6A162 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
KRT40Q6A162 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
KRT40Q6A162 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
KRT40Q6A162 INGX-201ENST00000359239 846 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 AC007663.1-201ENST00000438948 1240 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT40Q6A162 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.47■■□□□ 1.03
KRT40Q6A162 C2orf69P3-201ENST00000565542 1120 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.47■■□□□ 1.03
KRT40Q6A162 MIR3180-5-201ENST00000583743 153 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 MYC-208ENST00000641036 567 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
KRT40Q6A162 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 AC036111.1-201ENST00000533973 1582 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 AC135050.7-201ENST00000624508 2218 ntBASIC21.47■■□□□ 1.03
KRT40Q6A162 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
KRT40Q6A162 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
KRT40Q6A162 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.46■■□□□ 1.03
KRT40Q6A162 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.46■■□□□ 1.03
KRT40Q6A162 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 BICD1-207ENST00000551848 1962 ntBASIC21.46■■□□□ 1.03
KRT40Q6A162 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
KRT40Q6A162 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
KRT40Q6A162 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
KRT40Q6A162 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
KRT40Q6A162 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.45■■□□□ 1.03
KRT40Q6A162 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.45■■□□□ 1.02
KRT40Q6A162 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 TSPY14P-201ENST00000303979 915 ntBASIC21.45■■□□□ 1.02
KRT40Q6A162 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.45■■□□□ 1.02
KRT40Q6A162 CCR12P-201ENST00000446203 998 ntBASIC21.45■■□□□ 1.02
KRT40Q6A162 AC116562.4-202ENST00000641738 218 ntBASIC21.45■■□□□ 1.02
KRT40Q6A162 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
KRT40Q6A162 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.45■■□□□ 1.02
KRT40Q6A162 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.45■■□□□ 1.02
KRT40Q6A162 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.45■■□□□ 1.02
KRT40Q6A162 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
KRT40Q6A162 MYLKP1-201ENST00000509077 1580 ntBASIC21.44■■□□□ 1.02
KRT40Q6A162 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT40Q6A162 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT40Q6A162 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT40Q6A162 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.44■■□□□ 1.02
KRT40Q6A162 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
KRT40Q6A162 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
KRT40Q6A162 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
KRT40Q6A162 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms