Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 MIR564-202ENST00000385049 94 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC15.94■□□□□ 0.14
ABCA4P78363 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.94■□□□□ 0.14
ABCA4P78363 AC024563.2-201ENST00000603282 481 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 AL773604.1-201ENST00000617417 272 ntBASIC15.94■□□□□ 0.14
ABCA4P78363 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
ABCA4P78363 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.94■□□□□ 0.14
ABCA4P78363 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
ABCA4P78363 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
ABCA4P78363 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.94■□□□□ 0.14
ABCA4P78363 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.94■□□□□ 0.14
ABCA4P78363 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.94■□□□□ 0.14
ABCA4P78363 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA4P78363 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 MIR574-201ENST00000385209 96 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.93■□□□□ 0.14
ABCA4P78363 IGHV3-47-201ENST00000425060 335 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.93■□□□□ 0.14
ABCA4P78363 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.93■□□□□ 0.14
ABCA4P78363 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC15.93■□□□□ 0.14
ABCA4P78363 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 AC079776.4-201ENST00000511039 504 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.93■□□□□ 0.14
ABCA4P78363 AP005901.3-202ENST00000581653 237 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 AL121772.3-201ENST00000610840 674 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.93■□□□□ 0.14
ABCA4P78363 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
ABCA4P78363 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.93■□□□□ 0.14
ABCA4P78363 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
ABCA4P78363 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 KRT18P67-201ENST00000432816 1264 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 AC064862.7-201ENST00000604520 867 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 AL592071.1-201ENST00000611956 408 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
ABCA4P78363 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.92■□□□□ 0.14
ABCA4P78363 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.92■□□□□ 0.14
ABCA4P78363 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
ABCA4P78363 AC092865.5-201ENST00000545435 363 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 AC104390.1-201ENST00000555663 520 ntBASIC15.92■□□□□ 0.14
ABCA4P78363 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.92■□□□□ 0.14
ABCA4P78363 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms