Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 AC010331.1-201ENST00000611423 582 ntBASIC18.63■□□□□ 0.57
PTPN4P29074 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.63■□□□□ 0.57
PTPN4P29074 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.63■□□□□ 0.57
PTPN4P29074 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTPN4P29074 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
PTPN4P29074 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PTPN4P29074 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
PTPN4P29074 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
PTPN4P29074 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PTPN4P29074 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
PTPN4P29074 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN4P29074 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.62■□□□□ 0.57
PTPN4P29074 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.62■□□□□ 0.57
PTPN4P29074 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.62■□□□□ 0.57
PTPN4P29074 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.62■□□□□ 0.57
PTPN4P29074 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.62■□□□□ 0.57
PTPN4P29074 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTPN4P29074 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
PTPN4P29074 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PTPN4P29074 AC099398.1-201ENST00000567919 2776 ntBASIC18.62■□□□□ 0.57
PTPN4P29074 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
PTPN4P29074 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN4P29074 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PTPN4P29074 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PTPN4P29074 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 AL162741.1-201ENST00000565563 1558 ntBASIC18.61■□□□□ 0.57
PTPN4P29074 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN4P29074 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.61■□□□□ 0.57
PTPN4P29074 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
PTPN4P29074 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 AC009053.2-201ENST00000563701 2365 ntBASIC18.61■□□□□ 0.57
PTPN4P29074 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTPN4P29074 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN4P29074 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
PTPN4P29074 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.6■□□□□ 0.57
PTPN4P29074 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PTPN4P29074 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.6■□□□□ 0.57
PTPN4P29074 KSR1P1-201ENST00000446298 240 ntBASIC18.6■□□□□ 0.57
PTPN4P29074 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.6■□□□□ 0.57
PTPN4P29074 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.6■□□□□ 0.57
PTPN4P29074 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.6■□□□□ 0.57
PTPN4P29074 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.6■□□□□ 0.57
PTPN4P29074 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTPN4P29074 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms