Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.08■□□□□ 0.49
HDAC3O15379 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.08■□□□□ 0.49
HDAC3O15379 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
HDAC3O15379 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.08■□□□□ 0.48
HDAC3O15379 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.08■□□□□ 0.48
HDAC3O15379 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDAC3O15379 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 HTR7P1-201ENST00000538670 1336 ntBASIC18.07■□□□□ 0.48
HDAC3O15379 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.07■□□□□ 0.48
HDAC3O15379 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC3O15379 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.07■□□□□ 0.48
HDAC3O15379 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 UNC93B5-201ENST00000530315 699 ntBASIC18.07■□□□□ 0.48
HDAC3O15379 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HDAC3O15379 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC3O15379 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.07■□□□□ 0.48
HDAC3O15379 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HDAC3O15379 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HDAC3O15379 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.07■□□□□ 0.48
HDAC3O15379 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 FLJ13224-201ENST00000313737 1514 ntBASIC18.07■□□□□ 0.48
HDAC3O15379 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDAC3O15379 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.07■□□□□ 0.48
HDAC3O15379 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
HDAC3O15379 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
HDAC3O15379 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC3O15379 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC3O15379 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 MTDHP1-201ENST00000605323 784 ntBASIC18.06■□□□□ 0.48
HDAC3O15379 AL445675.2-201ENST00000620291 557 ntBASIC18.06■□□□□ 0.48
HDAC3O15379 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 RCC2P3-201ENST00000418112 1537 ntBASIC18.06■□□□□ 0.48
HDAC3O15379 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
HDAC3O15379 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HDAC3O15379 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDAC3O15379 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.06■□□□□ 0.48
HDAC3O15379 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.05■□□□□ 0.48
HDAC3O15379 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDAC3O15379 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
HDAC3O15379 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms