Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGB3O15347 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
HMGB3O15347 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGB3O15347 AC104417.2-201ENST00000562989 1793 ntBASIC14.94□□□□□ -0.02
HMGB3O15347 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.94□□□□□ -0.02
HMGB3O15347 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
HMGB3O15347 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
HMGB3O15347 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.94□□□□□ -0.02
HMGB3O15347 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
HMGB3O15347 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HMGB3O15347 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 AC008764.6-201ENST00000595909 2069 ntBASIC14.93□□□□□ -0.02
HMGB3O15347 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
HMGB3O15347 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGB3O15347 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 AK1-201ENST00000223836 736 ntTSL 3 BASIC14.93□□□□□ -0.02
HMGB3O15347 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC14.93□□□□□ -0.02
HMGB3O15347 AC123595.1-201ENST00000440769 1046 ntBASIC14.93□□□□□ -0.02
HMGB3O15347 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC14.93□□□□□ -0.02
HMGB3O15347 GALNS-213ENST00000569433 723 ntTSL 3 BASIC14.93□□□□□ -0.02
HMGB3O15347 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC14.93□□□□□ -0.02
HMGB3O15347 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
HMGB3O15347 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.93□□□□□ -0.02
HMGB3O15347 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HMGB3O15347 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
HMGB3O15347 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HMGB3O15347 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HMGB3O15347 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
HMGB3O15347 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HMGB3O15347 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGB3O15347 ESPNP-201ENST00000270691 2015 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 AL355472.2-201ENST00000422958 438 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 YBX1P1-201ENST00000445822 960 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 RARRES2P4-201ENST00000514074 484 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HMGB3O15347 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC14.92□□□□□ -0.02
HMGB3O15347 AL162412.1-201ENST00000567129 965 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 PLLP-204ENST00000569059 665 ntTSL 3 BASIC14.92□□□□□ -0.02
HMGB3O15347 KRT18P61-201ENST00000585825 1298 ntBASIC14.92□□□□□ -0.02
HMGB3O15347 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC14.92□□□□□ -0.02
HMGB3O15347 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HMGB3O15347 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms