Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 AC096733.2-201ENST00000609937 1394 ntBASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDHA3Q9Y5H8 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 AL023284.2-201ENST00000405850 579 ntBASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PCDHA3Q9Y5H8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 CD177P1-201ENST00000606252 935 ntBASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 FAM197Y4-202ENST00000622692 608 ntBASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDHA3Q9Y5H8 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
PCDHA3Q9Y5H8 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
PCDHA3Q9Y5H8 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
PCDHA3Q9Y5H8 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PCDHA3Q9Y5H8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.39■□□□□ 0.7
PCDHA3Q9Y5H8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AP000593.1-201ENST00000393668 712 ntBASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AC116562.2-201ENST00000507042 360 ntBASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AL135905.2-201ENST00000584934 1404 ntBASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 GPAT2P1-201ENST00000444924 1672 ntBASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AC138028.4-201ENST00000564984 1845 ntBASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
PCDHA3Q9Y5H8 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
PCDHA3Q9Y5H8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
PCDHA3Q9Y5H8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHA3Q9Y5H8 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PCDHA3Q9Y5H8 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms